Sequence Similarity Clusters for the Entities in PDB 2NX5

Entity #1 | Chains: A,F,K,Q
HLA-B35 protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 26 28 1640
95 % 121 125 306 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 0.9
PDBFlex
90 % 235 241 145
70 % 784 824 6
50 % 793 838 8
40 % 837 883 9
30 % 854 907 13
Entity #2 | Chains: B,G,L,R
Beta-2-microglobulin protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 670 717 2
95 % 717 765 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 0.9
PDBFlex
90 % 736 784 4
70 % 1017 1087 4
50 % 1036 1111 4
40 % 1036 1111 5
30 % 1036 1111 9
Entity #3 | Chains: C,H,M,S
EBV peptide, EPLPQGQLTAY protein, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D,I,N,T
ELS4 TCR alpha chain protein, length: 188 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 19283
95 % 2 2 17197 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.9
PDBFlex
90 % 36 39 901
70 % 1 1 18645
50 % 341 396 79
40 % 341 396 94
30 % 341 396 91
Entity #5 | Chains: E,J,P,U
ELS4 TCR beta chain protein, length: 243 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 19759
95 % 4 4 12580 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.9
PDBFlex
90 % 4 4 12412
70 % 329 379 45
50 % 347 405 69
40 % 347 405 86
30 % 347 405 87

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures