Sequence Similarity Clusters for the Entities in PDB 2NVU

Entity #1 | Chains: A
NEDD8-activating enzyme E1 regulatory subunit protein, length: 536 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 17652
95 % 5 9 2646 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.8
PDBFlex
90 % 5 9 2763
70 % 5 9 2826
50 % 5 9 2827
40 % 5 9 2786
30 % 5 9 2808
Entity #2 | Chains: B
Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera protein, length: 805 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61419
95 % 1 1 47095
90 % 1 1 44745
70 % 1 1 39384
50 % 1 1 34109
40 % 1 1 30841
30 % 1 1 27269
Entity #3 | Chains: C
NEDD8-conjugating enzyme Ubc12 protein, length: 180 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 61420
95 % 1 2 26389 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 2.9
PDBFlex
90 % 1 2 25524
70 % 1 2 23244
50 % 1 2 20447
40 % 2 3 13030
30 % 2 3 11887
Entity #4 | Chains: I,J
NEDD8 protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 14 2106
95 % 3 6 4254 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.4
PDBFlex
90 % 3 7 3872
70 % 9 20 1617
50 % 364 563 11
40 % 364 567 14
30 % 374 583 20

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures