Sequence Similarity Clusters for the Entities in PDB 2NTF

Entity #1 | Chains: A,L
Murine Antibody Fab RS2-1G9 Lambda Light Chain protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 36075
95 % 33 46 486 Flexibility: Low
Max RMSD: 8.9, Avg RMSD: 2.4
PDBFlex
90 % 39 52 460
70 % 464 656 8
50 % 4949 6427 1
40 % 4950 6428 1
30 % 4986 6475 1
Entity #2 | Chains: B,H
Murine Antibody Fab RS2-1G9 IGG1 Heavy Chain protein, length: 222 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 36076
95 % 2 2 28915 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.1
PDBFlex
90 % 2 2 27794
70 % 2364 3058 1
50 % 4950 6427 1
40 % 4951 6428 1
30 % 4987 6475 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures