Sequence Similarity Clusters for the Entities in PDB 2NQD

Entity #1 | Chains: A
Chagasin protein, length: 109 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 7 11596
95 % 1 7 9824 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.9
PDBFlex
90 % 1 7 9768
70 % 1 7 9481
50 % 1 7 8816
40 % 1 7 8424
30 % 2 11 5352
Entity #2 | Chains: B
Cathepsin L protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 16959
95 % 16 29 1014 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.5
PDBFlex
90 % 17 30 957
70 % 18 33 856
50 % 50 202 148
40 % 61 238 136
30 % 62 252 131

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures