Sequence Similarity Clusters for the Entities in PDB 2MJB

Entity #1 | Chains: A
Ubiquitin-60S ribosomal protein L40 protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 346 393 4
95 % 434 491 6
90 % 442 504 6
70 % 492 555 9
50 % 505 570 10
40 % 506 574 12
30 % 520 595 19

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

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Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5TOG 1 A Polyubiquitin-B 9606
2 5NVG 1 A Polyubiquitin-B 9606
3 5TOF 1 A Polyubiquitin-B 9606
4 4XOF 1 A Ubiquitin 9606
5 3A9J 1 A Ubiquitin 10090
6 3A9J 2 B Ubiquitin 10090
7 5GOB 1 A Ubiquitin 9606
8 5GOB 2 B D-ubiquitin 9606
9 5W46 1 A, B Polyubiquitin-B 9606
10 5GOD 1 A, B Ubiquitin 9606
11 5GOD 2 C, D D-ubiquitin 9606
12 5XVE 2 B Ubiquitin-40S ribosomal protein S27a UNP residues 1-76 9913
13 3NHE 2 B Ubiquitin 9606
14 5DK8 1 A, B Polyubiquitin-B Ubiquitin, UNP residues 2-75 9606
15 1YJ1 1 A, B, C Ubiquitin residues 1-76 9606
16 5NL4 1 A, B, C Polyubiquitin-C 9606
17 5V1Y 2 C, D Ubiquitin 9606
18 4M0W 2 B Ubiquitin 9913
19 4Y1H 1 A Ubiquitin-40S ribosomal protein S27a K33 linked tri-Ubiquitin. 9913
20 2GBJ 1 A, B Ubiquitin 9606
21 1YIW 1 A, B, C Ubiquitin 9606
22 1OGW 1 A UBIQUITIN LEF IS (4S)-5-FLUORO-L-LEUCINE RESIDUES 1-76 9606
23 2WWZ 1 A, B UBIQUITIN 9913
24 5KYC 2 C Polyubiquitin-B UNP residues 1-76 9606
25 4IUM 2 B Ubiquitin UNP residues 1-75 9606
26 4GU2 1 A Ubiquitin 5759
27 3A9K 1 A Ubiquitin 10090
28 3A9K 2 B Ubiquitin 10090
29 4HK2 1 A, B, C, D Ubiquitin 9606
30 5KYF 2 C Polyubiquitin-B UNP residues 1-76 9606
31 1XD3 2 B, D UBC protein 9606
32 5NLF 1 A, B, C Polyubiquitin-C 9606
33 4ZPZ 1 A, B Polyubiquitin-B ubiquitin, UNP residues 1-73 9606
34 6E2B 1 A, C, E, G, I, P Ubiquitin 9913
35 4UN2 1 A UBIQUITIN 9606
36 5VBT 1 A, B UBH04 32630
37 4PIH 1 A, B Ubiquitin 9606
38 2ZCC 1 A, B, C Ubiquitin 9913
39 6NYO 2 E Ubiquitin 4896
40 4PIJ 1 A, B Ubiquitin 9606
41 5NLI 1 A, B, C Polyubiquitin-C 9606
42 5O6T 2 C, D Polyubiquitin-B A variant of ubiquitin identified from a phage-display library 9606
43 5YT6 1 A, C, E, G Ubiquitin 9606
44 4V3L 2 B, D POLYUBIQUITIN-C G76 IN CHAIN B IS COVALENTLY LINKED TO K85 SIDE CHAIN IN CHAIN A. RESIDUES 77-152 9606
45 4LJO 2 B Polyubiquitin-C unp residues 77-152 9913
46 4FBJ 2 B NEDD8 9606
47 3BY4 2 B Ubiquitin 9606
48 6FDK 2 B Polyubiquitin-B 9606
49 5K9P 1 A Polyubiquitin-B 9606
50 5NLJ 1 A, B, C Polyubiquitin-B 9606
51 5KYD 1 D Polyubiquitin-B UNP residues 1-76 9606
52 4XYZ 1 A, B Polyubiquitin-C UNP residues 77-152 9913
53 3M3J 1 A, B, C, D, E, F Ubiquitin 9913
54 2ZNV 2 B, E Ubiquitin 10090
55 2ZNV 3 C, F Ubiquitin 10090
56 2GBM 1 A, B, C, D Ubiquitin 9606
57 5OXH 1 A Ubiquitin T66V/L67N mutant 9606
58 5EMZ 1 A, C, E Polyubiquitin-B 9606
59 5EMZ 2 B, D, F Polyubiquitin-B 9606
60 6B7M 2 B, C Polyubiquitin-C 9606
61 6HEI 2 B Polyubiquitin-B 9606
62 3VUX 1 A, B, C Polyubiquitin-C Ubiquitin 9606
63 2GBN 1 A Ubiquitin 9606
64 2ZCB 1 A, B, C Ubiquitin 9606
65 5OXI 1 A, B Ubiquitin L67S mutant 9606
66 4K1R 2 B, D Polyubiquitin-C 9606
67 6HPR 2 B, D Polyubiquitin-B Ubiquitin residues 1-76 contains N-terminal GSGGS after TEV cleavage. Chain D Gly76 forms isopeptide linkage with Chain C Lys85. 9606
68 3PRP 2 B, D Ubiquitin 9606 3.4.19.12 | Details
69 4I6N 2 B, D Ubiquitin 9606
70 3V6C 2 B Ubiquitin 9606
71 5AF5 1 A POLYUBIQUITIN-C 9606
72 5J8P 1 A ubiquitin 9606
73 5J8P 2 B D-ubiquitin 9606
74 1NDD 1 A, B, C, D PROTEIN (UBIQUITIN-LIKE PROTEIN NEDD8) HUMAN NEDD8 UBIQUITIN-LIKE PROTEIN MONOMER WITH 4 MOLECULES IN THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT 9606
75 4K7U 1 A, B, C ubiquitin UNP residues 1-76 9606 6.3.2.19 | Details
76 6EI1 2 B Polyubiquitin-B 9606
77 6FGE 2 C Polyubiquitin-B 9606
78 2J7Q 2 B, D UBIQUITIN THE C-TERMINAL GLY 76 IS REPLACED BY THE VINYLMETHYLESTER MOIETY UBIQUITIN FUSED TO VINYLMETHYLESTER, UBVME, RESIDUES 1-75 9606
79 3NS8 1 A, B Ubiquitin 9606
80 5GOJ 1 A Ubiquitin 9606
81 5GOJ 2 B D-ubiquitin 9606
82 6OI4 2 C, D ubiquitin 9606
83 1UBI 1 A UBIQUITIN 9606
84 2D3G 1 A, B ubiquitin 9913
85 5GOC 1 A Ubiquitin 9606
86 5GOC 2 D D-ubiquitin 9606
87 5X3N 1 A Polyubiquitin-B UNP residues 1-76 9606
88 5XIU 2 B Ubiquitin-40S ribosomal protein S27a 10090
89 5TXK 2 B Polyubiquitin-B 9606
90 5WFI 2 C, D Ubiquitin 9606
91 1UBQ 1 A UBIQUITIN 9606
92 6B7O 2 B, C Polyubiquitin-C 9606
93 4ZFR 2 B ubiquitin unp residues 77-152 9606
94 4MSM 2 B, D Ubiquitin UNP residues 77-152 9606
95 4HJK 1 A Ubiquitin UNP residues 87-162 9606
96 6GLC 2 B Polyubiquitin-B 9606
97 3N32 1 A Ubiquitin 9606
98 5L8H 2 B Polyubiquitin-B Recombinant expression followed by chemical synthesis. 9606
99 3ONS 1 A Ubiquitin 9606
100 5XU8 2 B Ubiquitin-40S ribosomal protein S27a UNP residues 1-76 9913
101 3MHS 4 D Ubiquitin 9606
102 5M93 1 A, B, C Polyubiquitin-B 9606
103 4K7W 1 A, B, C ubiquitin UNP residues 1-76 9606 6.3.2.19 | Details
104 2HD5 2 B Polyubiquitin residues 1-76 9913
105 5NMC 1 A, B, C Polyubiquitin-C 9606
106 5GOI 1 A, B Ubiquitin 9606
107 5GOI 2 C, D D-ubiquitin 9606
108 1WRD 2 B Ubiquitin 9913
109 5GVI 2 B ubiquitin 10090
110 5GVI 3 C ubiquitin 10090
111 4K7S 1 A, B, C ubiquitin UNP residues 1-73 9606 6.3.2.19 | Details
112 2BKR 2 B NEDDYLIN 9606
113 5CVM 2 B Polyubiquitin-B UNP residues 1-76 9606
114 2FCS 1 A, B Ubiquitin residues 1-76 9606
115 4Q5E 2 B Polyubiquitin 4932 6.3.2.19 | Details
116 5V1Z 2 C, D Ubiquitin 9606
117 3ALB 1 A, B, C, D ubiquitin 9606
118 6GZS 2 B Polyubiquitin-B 9606
119 5D0M 3 B Polyubiquitin-B UNP residues 1-76 9606
120 5XIS 2 B, E Ubiquitin-40S ribosomal protein S27a 10090
121 5XIS 3 C, F Ubiquitin-40S ribosomal protein S27a 10090
122 4PIG 1 A, B, C, D Ubiquitin 9606
123 5X3M 1 A Polyubiquitin-B 9606
124 5X3M 2 D D-ubiquitin D-Ub-S65E-NH2 9606
125 5NL5 1 A, B, C Polyubiquitin-B 9606
126 6ML1 2 C, E Ubiquitin variant 15.1a This is a Ubv (ubiquitin variant) selected by phage display to bindthe USP15 USP domain with high affinity 9606
127 4MSQ 2 B, D Ubiquitin UNP residues 77-152 9606
128 4LDT 2 B Ubiquitin aldehyde 9606
129 4LDT 4 D Ubiquitin 9606
130 3VUW 1 A, B, C Polyubiquitin-C Ubiquitin 9606
131 3TMP 2 B, D, F, H Polyubiquitin-C Ubiquitin-like 1 9606
132 2QHO 1 A, C, E, G Ubiquitin 9913
133 3H7P 1 A Ubiquitin 9606
134 3H7P 2 B Ubiquitin 9606
135 4WZP 1 A, B, C, D, E, F, G, H ubiquitin phosphorylation at Ser65 UNP residues 1-76 9606
136 3EHV 1 A, B, C Ubiquitin 9606 6.3.2.19 | Details
137 5GO7 1 A Ubiquitin 9606
138 5GO7 2 B D-ubiquitin 9606
139 6CPM 2 E, F Ubiquitin variant 15.1d This is a Ubv (ubiquitin variant) selected by phage display to bind the USP15 USP domain with high affinity 9606
140 1P3Q 2 U, V Ubiquitin 9913
141 2OOB 2 B Ubiquitin 9913
142 5ULF 2 B, D Ubiquitin 9606
143 5KYE 2 C, D Polyubiquitin-B UNP residues 1-76 9606
144 6ISU 2 B Ubiquitin 9606
145 6ISU 3 C Ubiquitin 9606
146 4F8C 2 B, D NEDD8 9606
147 5ULH 2 B Ubiquitin 9606
148 3HM3 1 A, B, C, D Ubiquitin 9606
149 5LRW 2 B, D Polyubiquitin-B Gly76 was replaced with 2-bromoethylamine 9606
150 5GOK 1 A Ubiquitin 9606
151 5GOK 2 B D-ubiquitin 9606
152 4WLR 3 C Polyubiquitin-B 9606
153 3WWQ 1 A, D, G, J Ubiquitin 10090
154 3WWQ 2 B, E, H, K Ubiquitin 10090
155 5JG6 2 B, C Polyubiquitin-B 9606
156 3EFU 1 A Ubiquitin 9606
157 4Q5H 2 B Polyubiquitin 4932 6.3.2.19 | Details
158 5AF4 1 A, B, C, D, E, F, G, H UBIQUITIN ISOPEPTIDE LINKAGES BETWEEN A76 C AND B33 NZ, C76 C AND D33 NZ, E76 C AND F33 NZ 9606
159 4V3K 2 B, E POLYUBIQUITIN-C LYS85 IN CHAINS A AND D IS COVALENTLY LINKED TO GLY76 IN CHAINS B AND E, RESPECTIVELY. RESIDUES 77-152 9606
160 4IG7 2 B Ubiquitin 9606
161 2JF5 1 A, B UBIQUITIN ISO-PEPTIDE LINK BETWEEN A-LYS63 AND B-GLY76 9606
162 5MN9 1 A, B Ubiquitin-40S ribosomal protein S27a 9913
163 5WVO 1 A, B Ubiquitin 9606
164 3V6E 2 B Ubiquitin 9606
165 1UZX 2 B UBIQUITIN 9913
166 5YDR 1 A, D Polyubiquitin-B UNP residues 1-73 9606
167 1S1Q 2 B, D ubiquitin 9606
168 6NYA 2 B, E Ubiquitin residues 77-152 4565
169 4LJP 2 B Polyubiquitin-C unp residues 77-152 9913
170 3VUY 1 A, B, C Polyubiquitin-C Ubiquitin 9606
171 3PHW 2 B, D, F, H Ubiquitin-40S ribosomal protein S27a UNP residues 1-75 9606
172 4PQT 2 B Protein UBBP4 unp residues 77-152 9606
173 5BZ0 2 B Ubiquitin-40S ribosomal protein S27a Ubiquitin from bovine erythrocytes 9913
174 2GBR 1 A, B, C Ubiquitin 9606
175 4XKL 1 A, C Ubiquitin 9606
176 4FJV 2 B, D Polyubiquitin-C 9606
177 5DFL 1 B Ubiquitin 9606
178 2C7N 2 B, D, F, H, J, L UBIQUITIN 9913
179 5HPS 2 B Ubiquitin variant P1.1 9606
180 5GOH 1 A Ubiquitin 9606
181 5GOH 2 D D-ubiquitin 9606
182 3ZNI 4 D, H, L, P POLYUBIQUITIN-C CARBONYL CARBON OF G76 IN CHIANS D, H, L AND P FORMS AN ISOPEPTIDE LINKAGE WITH THE SIDECHAIN OF K85 IN CHAINS C, G, K AND O, RESPECTIVELY. GSGGS LINKER AT THE N- TERMINUS OF PROTEIN RESULTED FROM CLONING RESIDUES 77-152 9606
183 2G45 2 B, E Ubiquitin 9606
184 6AQR 4 D Polyubiquitin-C 9606
185 5MNJ 2 B, F Polyubiquitin-B gsggs linker at the N-terminus resulted from cloning. G76 in chain B is covalently linked to K85 side chain in Chain A. 9606
186 5ZQ3 2 C, D Ubiquitin 9606
187 5ZQ4 2 C, D ubiquitin 9606
188 4GSW 1 A, B Ubiquitin 5759
189 4RF1 2 B Ubiquitin-60S ribosomal protein L40 UNP residues 1-75 9606
190 1SIF 1 A ubiquitin 9606
191 5JBY 1 A, C, E ubiquitin 9606
192 5JBY 2 B, D, F D-ubiquitin 9606
193 5IFR 2 B Polyubiquitin-B 9606
194 2IBI 2 B Ubiquitin 9606
195 5L6H 2 B, D, E Ubiquitin-40S ribosomal protein S31 4932
196 6D4P 2 C Ubiquitin Variant Ubv.D1.1 9606
197 6JB7 1 B Ubiquitin 9606
198 5GOG 1 A Ubiquitin 9606
199 5GOG 2 B D-ubiquitin 9606
200 2GBK 1 A, B, C, D Ubiquitin 9606
201 4AUQ 3 C, F POLYUBIQUITIN-C UBIQUITIN, RESIDUES 1-76 9606
202 4NNJ 2 B, D, E Uba1 UNP residues 1-76 4932
203 4Z9S 1 A, B, C, D Ubiquitin-40S ribosomal protein S27a UNP RESIDUES 1-76 9913
204 6DGF 2 B Polyubiquitin-B 9606
205 2XEW 1 A, B, C, D, E, F, G, H, I, J, K, L UBIQUITIN UBIQUITIN POLYMER LINKED THROUGH LYS11 IN AN ISOPEPTIDE LINKAGE 9606
206 2WDT 2 B, D UBIQUITIN C-TERMINAL GLY76 OF WILDTYPE UBIQUITIN IS REPLACED BY A VINYL METHYLESTER MOIETY (UBVME) RESIDUES 1-75 9606
207 1XT9 2 B Neddylin 9606
208 1AAR 1 A, B DI-UBIQUITIN 9913
209 4AP4 3 C, F UBIQUITIN C ISOPEPTIDE AMIDE LINKED TO UBCH5A (CHAIN B AND CHAIN E) RESIDUES 76-152 9606
210 4UEL 2 B POLYUBIQUITIN-B GLY76 OF UBIQUITIN IS REPLACED BY GLY-AYE THAT IS COVALENTLY LINKED TO THE ACTIVE SITE CYS88 OF UCH-L5 9606
211 4II2 2 B Ubiquitin-60S ribosomal protein L40 UNP residues 1-76 4896
212 6OQ1 1 A, B Ubiquitin 9606
213 6OQ1 2 C, D Ubiquitin 9606
214 6OQ1 3 E, F Ubiquitin 9606
215 6RYA 2 B, D, F Polyubiquitin-C 9606
216 4ZFT 2 B, D Polyubiquitin-B unp residues 77-152 9606
217 2WX0 1 A, B, E, F UBIQUITIN 9913
218 3A1Q 1 A, D Ubiquitin 10090
219 3A1Q 2 B, E Ubiquitin 10090
220 5HPL 2 C, D Ubiquitin variant R5.4 9606
221 5TR4 2 B, D Ubiquitin 9913
222 4BOS 2 C, E POLYUBIQUITIN-C RESIDUES 1-76 9606
223 3H7S 1 A, B Ubiquitin 9606
224 3C0R 2 B, D Ubiquitin 9606
225 5AIU 3 C, F POLYUBIQUITIN-C CHAIN B COVALENTLY LINKED TO CHAINS C, CHAIN E IS COVALENTLY LINKED TO CHAIN F UNP RESIDUES 1-76 9606
226 6PGV 2 B Polyubiquitin-B 9606
227 4S22 1 A, B, C, D Ubiquitin residues 77-152 9913
228 2C7M 2 B UBIQUITIN 9913
229 1TBE 1 A, B TETRAUBIQUITIN 9606
230 6NXK 1 A, B Polyubiquitin-C 9606
231 3PT2 2 B Ubiquitin B 9606
232 5VZW 2 C, D Ubiquitin 9606
233 3PRM 2 B, D Ubiquitin 9606 3.4.19.12 | Details
234 4R62 2 B Ubiquitin-40S ribosomal protein S27a Ubiquitin 9606
235 5EYA 3 C, D Polyubiquitin-B UNP residues 1-76 9606
236 5GO8 1 A ubiquitin 9606
237 5GO8 2 B D-ubiquitin 9606
238 3A33 2 B Ubiquitin 9606
239 3VHT 3 C Ubiquitin 10090
240 5XIT 1 D, F Ubiquitin-40S ribosomal protein S27a 10090
241 5XIT 3 B, H Ubiquitin-40S ribosomal protein S27a 10090
242 6ASR 1 A, C Ubiquitin residues 1-76 9606
243 2FCN 1 A, B Ubiquitin residues 1-76 9606
244 4DHJ 2 B, F, J, M Ubiquitin aldehyde 9606
245 4DHJ 3 D, H Ubiquitin 9606
246 3ZNH 2 B POLYUBIQUITIN-B GLY76 IS REPLACED WITH A PROPARGYL GROUP 9606
247 4BBN 2 C POLYUBIQUITIN-B RESIDUES 1-76 9913
248 4BBN 3 F POLYUBIQUITIN-B RESIDUES 229-304 9913
249 4NQL 2 B Ubiquitin 10090
250 4NQL 3 C Ubiquitin 10090
251 6NJG 2 C Polyubiquitin-B 9606
252 1NBF 2 C, D Ubiquitin aldehyde 9606
253 2O6V 1 A, C, E, G Ubiquitin 9606
254 2O6V 2 B, F Ubiquitin 9606
255 2O6V 3 D, H Ubiquitin 9606
256 3OFI 2 C, D Ubiquitin 9606
257 3AUL 1 A, B Polyubiquitin-C Ubiquitin 9606
258 3UGB 2 B Polyubiquitin-C unp residues 1-76 9606
259 5JBV 1 A Ubiquitin 9606
260 5JBV 2 B D-ubiquitin 9606
261 5X3O 1 A Polyubiquitin-B UNP residues 1-76 9606
262 5X3O 2 D D-ubiquitin 9606
263 5ULK 2 B Ubiquitin 9606
264 5ZQ5 2 B, D Ubiquitin 9606
265 6FX4 2 B, D Polyubiquitin-B 9606
266 3NOB 1 A, B, C, D, E, F, G, H Ubiquitin 9606
267 6CRN 2 E, F, G, H Ubiquitin variant 15.2 This is a Ubv (ubiquitin variant) selected by phage display to bind the USP15 USP domain with high affinity 9606
268 6D68 2 C, D Ubv.G1.1 9606
269 6QK9 1 A, B, C, D, E, F, G, H, I, J, K, L Polyubiquitin-B 9606
270 3IFW 2 B Ubiquitin 9606
271 3N3K 2 B Ubiquitin 9606
272 6A6I 2 B, D Polyubiquitin-B UNP residues 1-76 9606
273 6A6I 3 F, H Polyubiquitin-B UNP residues 1-77 9606
274 2FCM 1 A, B Ubiquitin residues 1-76 9606
275 6JWI 1 G, I Ubiqutin 10090
276 4KSK 2 C, D Polyubiquitin-C unp residues 76-152 9606
277 5L6J 2 B, D Ubiquitin-40S ribosomal protein S31 4932
278 5HPK 2 B Ubiquitin variant NL.1 9606
279 5OHL 2 I, J, K, L, M, N, O, P Polyubiquitin-B 9606
280 3I3T 2 B, D, F, H Ubiquitin 9606
281 5FER 3 C, F Ubiquitin-40S ribosomal protein S27a 9913
282 5IBK 3 C, F Polyubiquitin-B UNP residues 75-150 9606
283 5OHK 2 B Polyubiquitin-B 9606
284 1CMX 2 B, D PROTEIN (UBIQUITIN YUH1-UBAL) UBIQUITIN C-TERMINUS MODIFIED TO AN ALDEHYDE ALL 9606 3.1.2.15 | Details
285 6JKY 3 C, F Ub 48269
286 3OJ3 1 A, B, C, D, E, F, G, H Ubiquitin Ubiquitin, UNP residues 1-76 9606
287 5N38 2 B Polyubiquitin-B Ser65 is phosphorylated 9606
288 4HCP 2 B NEDD8 unp residues 1-76 9606
289 3O65 2 B, D, F, H Ubiquitin 9606
290 5CRA 2 C, D Polyubiquitin-B UNP residues 1-75 9606
291 6IF1 2 C, D Ubiquitin 9606
292 5U4P 3 C Ubiquitin-40S ribosomal protein S31 4932
293 5L6I 2 B, D, E Ubiquitin-40S ribosomal protein S31 4932
294 6O82 2 B, D Ubiquitin-60S ribosomal protein L40 residues 1-76 4896
295 5XPK 1 A Ubiquitin 9606
296 5XPK 2 B D-ubiquitin 9606
297 5XDP 1 B D-ubiquitin 9606
298 5XDP 2 A ubiquitin-B K11/48-branched teraubiquitin 9606
299 5O76 3 E, F UbV.pCBL ubiquitin variant 9606
300 5D0K 3 B, E, H, K Polyubiquitin-B UNP residues 1-76 9606
301 5OHV 1 A, C Ubiquitin 9606
302 5KNL 2 B, E Ubiquitin 84753
303 4I6L 2 B Ubiquitin UNP residues 77-150 9606
304 5TUT 2 B Ubiquitin 9606
305 3OLM 2 D Ubiquitin 4932
306 3CMM 2 B, D Ubiquitin 559292
307 4MDK 2 E, F, G, H Ubiquitin UNP residues 76-152 9606
308 5N2W 2 B Polyubiquitin-B Ser65 is phosphorylated to give SEP65 9606
309 4MM3 1 A Ubiquitin UNP residues 1-76 9606
310 2FIF 1 A, C, E Ubiquitin 9913
311 5JQS 2 D Ubiquitin-40S ribosomal protein S27a 9913
312 5YDK 2 B, E, H, K Ubiquitin-40S ribosomal protein S27a UNP residues 1-76 9606
313 5YDK 3 C, D, I, J Ubiquitin-40S ribosomal protein S27a UNP residues 1-76 9606
314 2XBB 2 C, D UBIQUITIN 9913
315 2GMI 3 C Ubiquitin 9606
316 4HCN 2 B Polyubiquitin unp RESIDUES 1-76 4932
317 5J26 1 B Ubiquitin Variant i53 9606
318 3DVG 3 X Ubiquitin D77 9606
319 3DVG 4 Y Ubiquitin 9606
320 1WR6 2 E, F, G, H ubiquitin 9913
321 3LDZ 1 E, F, G Ubiquitin 9913
322 3PTF 2 C, D Polyubiquitin-B Ubiquitin 9606
323 6BVA 3 A, B Polyubiquitin-B 9606
324 5ZQ7 2 B, D Ubiquitin 9606
325 3RUL 1 A, B, C, D Ubiquitin 9606
326 5BNB 2 E, F, G, I Polyubiquitin-B 9606
327 5LRX 2 B, D Polyubiquitin-B Gly76 was replaced with propargylamide 9606
328 5CAW 2 B, D Polyubiquitin-B phosphorylated at Ser65 Gly76 exchanged with chemical probe, bromopropylamine. The bromide was lost during the coupling. 9606
329 4XOK 1 A, B, C Ubiquitin 9606
330 3MTN 2 B, D UBIQUITIN VARIANT UBV.21.4 9606
331 5ZQ6 2 B, D Ubiquitin 9606
332 5LRV 2 B Polyubiquitin-B Lys11 was replaced with a diaminobutyric acid (DAB) residue 9606
333 5LRV 3 C Polyubiquitin-B Gly76 was replaced with a ligation handle for diubiquitin probe generation 9606
334 6S53 2 D, F, J, L Polyubiquitin-C 9606
335 3DVN 3 U, X Ubiquitin D77 9606
336 3DVN 4 V, Y Ubiquitin 9606
337 5L8W 3 C Polyubiquitin-B Recombinant expression followed by chemical synthesis 9606
338 1F9J 1 A, B TETRAUBIQUITIN 9606
339 6BYH 3 C, D, H Polyubiquitin-B 9606
340 6NXL 1 A, B, C, D, E, F, G, H Polyubiquitin-B 9606
341 2FID 1 A Ubiquitin 9913
342 5OHP 2 B, C Polyubiquitin-B 9606
343 4HXD 1 A, C Polyubiquitin-C 9606 3.4.19.12 | Details
344 1YD8 1 U, V UBIQUIN 9913
345 4BOZ 2 B, C, E UBIQUITIN-C 9606
346 5HPT 2 B, E, H Ubiquitin variant P2.3 9606
347 3WXG 2 B, E Ubiquitin 10090
348 3WXG 3 C, F Ubiquitin UNP residues 1-72 10090
349 6CP2 3 C Polyubiquitin-B 9606
350 4XKH 1 A, B, D, F, G, I Polyubiquitin-C UNP RESIDUES 77-152 9913
351 3IHP 2 C, D Ubiquitin 9606
352 6D6I 3 C, F Ubv.V1.1 9606
353 5LN1 2 U Polyubiquitin-B 9606
354 3K9P 2 B Ubiquitin 9606
355 3DBH 3 I, J, K, L NEDD8 9606
356 4BVU 3 C UBIQUITIN OXYESTER LINK BETWEEN G76 AND UBCH5C S85 9606
357 6JB6 1 B Ubiquitin 9606
358 5CVN 3 D Polyubiquitin-B UNP residues 1-76 9606
359 3JSV 1 A Ubiquitin 9606
360 3JSV 2 B Ubiquitin 9606
361 3DBL 3 I, J, K, L NEDD8 9606
362 3TBL 2 D, E Ubiquitin 9606
363 2HTH 1 A Ubiquitin 9606
364 3KW5 2 B Ubiquitin 9606
365 6EQI 1 A Ubiquitin 9606
366 5E6J 2 B, E ubiquitin 32630
367 5E6J 3 C, F Polyubiquitin-B 32630
368 2NVU 4 I, J NEDD8 9606
369 2XK5 1 A UBIQUITIN 9606
370 2XK5 2 B UBIQUITIN 9606
371 4JQW 2 C Polyubiquitin-C Ubiquitin 9606
372 4RF0 2 B Ubiquitin-60S ribosomal protein L40 UNP residues 1-75 9606
373 3KVF 2 B Ubiquitin 9606
374 6FYH 2 B Polyubiquitin-B 9606
375 6O83 2 B, D Ubiquitin-60S ribosomal protein L40 residues 1-75 4896
376 5AF6 1 A, B, C, D, E UBIQUITIN ISOPEPTIDE BONDS ACROSS BETWEEN CHAINS, A76 C AND D33 NZ, B76 C AND A33 NZ, C76C AND B33 NZ, E76 C AND C33 NZ. ISOPEPTIDE BOND ACROSS THE ASU FOR, D76 C AND E33 NZ SYMM 9606
377 3H1U 1 A, B Ubiquitin 9913
378 6HEK 2 B, D Polyubiquitin-B 9606
379 5JTJ 2 B Polyubiquitin-B 9606
380 2WX1 1 A, B UBIQUITIN 9913
381 4WUR 2 B Polyubiquitin-B UNP residues 1-76 9606
382 4II3 2 B, D Ubiquitin-60S ribosomal protein L40 UNP residues 1-76 4896
383 5C7J 2 C, D Polyubiquitin-C UNP residues 1-74 9606
384 4S1Z 1 A, B, C, D, E Ubiquitin residues 1-76 9606
385 6DC6 2 B, D Ubiquitin 9606
386 4XOL 1 A, B Ubiquitin 9606
387 5JP3 2 B, D, F, H Polyubiquitin-B 9606
388 4P4H 3 S, T, U, W, X Ubiquitin-60S ribosomal protein L40 9606
389 3GZN 3 I, J NEDD8 9606
390 5O44 1 A, E Ubiquitin 7370
391 5O44 2 B, C Polyubiquitin-B 9606
392 5O44 3 D, F Polyubiquitin-B 9606
393 3PHD 2 E, F, G, H Polyubiquitin 9606
394 3DBR 3 I, J, K, L NEDD8 9606
395 5YIK 2 C, D, F ubiquitin UNP RESIDUES 1-76 9606
396 5ZBU 3 E Ubiquitin 9606
397 3N30 1 A, B Ubiquitin 9606
398 4P5O 5 H, K NEDD8 9606
399 3ZLZ 1 A, B UBIQUITIN TRI-UBIQUITIN CHAIN LINKED VIA LYS6. K48R IN BOTH MOLECULES. ISOPEPTIDE LINKAGES ARE NOT RESOLVED. 9606
400 3JVZ 3 X, Y Ubiquitin 9606
401 4DHZ 2 B Ubiquitin aldehyde 9606
402 4DHZ 3 E Ubiquitin 9606
403 5YIJ 2 C, D, G Ubiquitin UNP RESIDUES 1-76 9606
404 3DQV 1 A, B NEDD8 NEDD8 C-terminus covalently linked to Cul5 Lys724 9606
405 5UDH 3 E Ubiquitin C variant Hexa-his N-terminal tagged protein UNP residues 17-92 9606
406 5AIT 3 C, F POLYUBIQUITIN-C UNP RESIDUES 1-76 9913
407 5O6S 1 A, B, C, D, E, F Polyubiquitin-B Variant of ubiquitin identified from phage-display 9606
408 3VFK 1 A ubiquitin, C-terminal fused by Cys-Lys-D-Ala-D-Ala 9606
409 5C7M 2 B, C Polyubiquitin-C UNP residues 1-75 9606
410 1R4M 3 I, J, K, L Ubiquitin-like protein NEDD8 9606
411 3JW0 3 X, Y Ubiquitin 9606
412 4LCD 3 E, F Ubiquitin UNP residues 1-75 9606
413 6DJ9 2 G, H, I, J, K, L Ubiquitin Variant UbV 15.D The following is a variant of ubiquitin selected by phage display to bind to the USP15 N-terminus 9606
414 4DDG 2 D, E, F, G, H, I, M, N, O, P, Q, R Polyubiquitin-C 9606
415 5JTV 2 B, D, F, H Polyubiquitin-B 9606
416 5OHN 2 B, D Polyubiquitin-B 9606
417 5TTE 3 F ubiquitin unp residues 1-76 4565
418 2FCQ 1 A, B Ubiquitin residues 1-76 9606
419 3EEC 1 A, B Ubiquitin 9606
420 5VNZ 3 C, F Ubiquitin 9606
421 6H4H 2 C, D Polyubiquitin-B 9606
422 4NQK 2 E, F, G, H, I, J Ubiquitin UNP residues 76-152 9606
423 6C16 3 D, H Polyubiquitin-B 9606
424 4DDI 2 D, E, F, G, H, I Polyubiquitin-C 9606
425 5H7S 1 E, F Ubiquitin-like 1 9606
426 5EDV 3 E, F, G, H Polyubiquitin-B UNP residues 1-76 9606
427 5CVO 3 C, F Polyubiquitin-B UNP residues 1-76 9606
428 4UF6 2 B, E, H, K POLYUBIQUITIN-B GLY76 OF UBIQUITIN IS REPLACED BY GLY-AYE THAT IS COVALENTLY LINKED TO THE ACTIVE SITE CYS88 OF UCH- L5 9606
429 5OHM 1 A, C, E, G, I, K Polyubiquitin-C 9606
430 4ZUX 10 X, c, h, m Polyubiquitin-B 9606
431 2DX5 2 B Ubiquitin 9913
432 3OJ4 2 B, E Ubiquitin Ubiquitin, UNP residues 1-76 9606
433 1R4N 3 I, J, K, L Ubiquitin-like protein NEDD8 9606
434 5VO0 3 C, F Ubiquitin 9606
435 6DJW 2 B Ubiquitin 9913
436 2AYO 2 B Ubiquitin 9606
437 5KHY 1 A Polyubiquitin-B 9606
438 5KHY 2 B Polyubiquitin-B 9606
439 6DJX 2 B Ubiquitin 9913
440 4JIO 2 U Ubiquitin 9606
441 4WHV 3 A, F, G, L Polyubiquitin-B unp residues 1-76 9606
442 6VEN 7 K Ubiquitin 9606
443 6V5D 1 A Ubiquitin 9606
444 6UH5 11 Q Ubiquitin 9606
445 6KOW 1 A Polyubiquitin-B 9606
446 6KOX 1 A Polyubiquitin-B 9606
447 6KIU 11 O Ubiquitin 9606
448 6KIV 9 O Ubiquitin 9606
449 6KIW 9 O Ubiquitin 9606
450 6K4I 1 A ubiquitin 9606
451 6OQ2 1 B Ubiquitin 9606
452 6OQ2 2 D Ubiquitin 9606
453 6OQ2 3 E Ubiquitin 9606
454 6R7F 14 N NEDD8 9606
455 6R7I 9 N NEDD8 9606
456 6OB1 1 A Ubiquitin 9606
457 6OB1 2 B Ubiquitin 9606
458 6OA9 2 H, J, K Ubiquitin 4932
459 6OAA 3 H Ubiquitin 4932
460 6O96 8 L Polyubiquitin-B 9606
461 6JMA 7 Y Ubiquitin 9606
462 6J99 7 L Ubiquitin 9606
463 6NQA 7 L Ubiquitin 9606
464 6NOG 5 L Ubiquitin 9606
465 6NN6 8 L Ubiquitin 9606
466 6QF8 1 A Polyubiquitin-B 9606
467 6NJ9 5 L Ubiquitin 9606
468 6N13 2 D ubiquitin 9606
469 6N13 4 A phosphoubiquitin 9606
470 6MSB 19 u, w Ubiquitin 9606
471 6MSD 19 u, w Ubiquitin 9606
472 6MSE 19 u Ubiquitin 9606
473 6MSG 19 u Ubiquitin 9606
474 6FTX 8 N, O Polyubiquitin-B 9606
475 5ZD0 1 A ubiquitin 9606
476 5YMY 1 A Ubiquitin 9606
477 5YMY 2 B Ubiquitin 9606
478 5VZM 1 A Ubiquitin UNP residues 1-76 9606
479 5XK4 1 A Polyubiquitin-B UNP residues 1-76 9606
480 5XK5 1 A Polyubiquitin-B UNP residues 1-76 9606
481 5VEY 2 B Polyubiquitin-B 9606
482 5VF0 1 A Polyubiquitin-B 9606
483 5XBO 1 A Polyubiquitin-B UNP residues 1-76 9606
484 5UJL 1 A, B Ubiquitin residues 1-76 9606
485 5UJN 1 A, B Ubiquitin 9606
486 5GJQ 34 y Polyubiquitin-B UNP RESIDUES 1-76 9606
487 5KGF 8 M, O Ubiquitin 9606
488 2NBD 1 A entity 9606
489 2NBE 1 A entity 9606
490 2N7K 1 A NEDD8 9606
491 5A5B 9 9 UBIQUITIN ALDEHYDE 9606
492 2N3U 2 B, C Ubiquitin-60S ribosomal protein L40 UNP residues 1-76 9606
493 2N3V 2 B, C Ubiquitin-60S ribosomal protein L40 UNP residues 1-76 9606
494 2N3W 2 B, C Ubiquitin-60S ribosomal protein L40 UNP residues 1-76 9606
495 2N2K 1 A ubiquitin 9606
496 2N2K 2 B ubiquitin 9606
497 2N13 2 B Ubiquitin 9606
498 2N13 3 C Ubiquitin 9606
499 2MWS 1 A Ubiquitin UNP residues 1-76 9606
500 2MUR 2 B Ubiquitin 9606
501 2MSG 1 A Ubiquitin UNP residuse 1-72 9606
502 2MRO 1 A Polyubiquitin-B Human Ubiquitin 9606
503 2MRE 1 A Polyubiquitin-C unp residues 1-76 9606
504 2MOR 1 A Ubiquitin UNP residues 1-76 9606
505 2MJB 1 A Ubiquitin-60S ribosomal protein L40 Ubiquitin-like 3 domain 9606
506 2MJ5 1 A Polyubiquitin-C UNP residuses 1-76 9606
507 2MI8 1 A Ubiquitin 9606
508 2RU6 1 A Ubiquitin 9606
509 2MCN 2 B Ubiquitin UNP residues 1-76 9606
510 2MBQ 1 A, B Ubiquitin UNP residues 1-76 9606
511 2MBO 1 A, B Ubiquitin UNP residues 1-76 9606
512 2MBH 2 A Ubiquitin 9606
513 2MBB 2 B Polyubiquitin-B UNP P0CG47 residues 1-76 9606
514 2M0X 1 A engineered ubiquitin variant 9606
515 2LZ6 1 A Ubiquitin 9606
516 2LVO 1 A Ubiquitin 9606
517 2LVP 1 A, B Ubiquitin 9606
518 2LVQ 1 A, B Ubiquitin 9606
519 2RSU 1 A Ubiquitin 9606
520 2LJ5 1 A Ubiquitin 9606
521 2LD9 1 A Ubiquitin 9606
522 2L3Z 1 A Ubiquitin UNP Residues 1-76 9606
523 2L0T 1 A Ubiquitin 9606
524 2L0F 1 A Ubiquitin 9606
525 2L00 2 B Ubiquitin ubiquitin core domain 4932
526 2RR9 1 A, B ubiquitin 9606
527 2KWV 2 B Ubiquitin 9606
528 2KWU 2 B Ubiquitin 9606
529 2KTF 1 A Ubiquitin 9606
530 2KOX 1 A Ubiquitin 9606
531 2KO3 1 A NEDD8 9606
532 2KN5 1 A Ubiquitin 9606
533 2KLG 1 A Ubiquitin 9606
534 2KJH 2 B Ubiquitin 9606
535 2KHW 2 B Ubiquitin 9606
536 2KDE 2 B, C Ubiquitin 8355
537 2KDF 2 B, C Ubiquitin 9606
538 2K8B 1 A Ubiquitin 9606
539 2K8C 1 A Ubiquitin 9606
540 2K6D 2 B Ubiquitin ubiquitin 9606
541 2K39 1 A Ubiquitin 8355
542 2JZZ 1 A Ubiquitin 9606
543 2JY6 1 A Ubiquitin protein 9606
544 2JWZ 1 A Ubiquitin 4932
545 2JVC 1 A ubiquitin_like protein
546 2JT4 2 B Ubiquitin SH3 domain sequence database residues 350-420 4932
547 2Z59 2 B Ubiquitin 9606
548 2JRI 2 B, C UBC protein sequence database residues 318-469 9606
549 2PE9 1 A, B Ubiquitin 9606
550 2PEA 1 A, B Ubiquitin 9606
551 2NR2 1 A Ubiquitin 9606
552 2G3Q 2 B Ubiquitin 4932
553 2DEN 2 B Polyubiquitin-B 9606
554 2FUH 2 B Ubiquitin Ubiquitin 10116
555 1ZW7 1 A Ubiquitin 4932
556 1ZGU 2 B Ubiquitin 9606
557 2BGF 1 A, B DI-UBIQUITIN ISOPEPTIDE BOND BETWEEN GLY76A AND LYS48B 9606
558 1XQQ 1 A ubiquitin 9606
559 1WR1 1 A Ubiquitin 4932
560 1V80 1 A Ubiquitin/60s ribosomal protein L40 fusion 9913
561 1V81 1 A Ubiquitin/60s ribosomal protein L40 fusion 9913
562 1Q5W 2 B Ubiquitin 9606
563 1Q0W 2 B Ubiquitin 4932
564 1OTR 2 B Ubiquitin 4932
565 1G6J 1 A UBIQUITIN 9606
566 1FXT 2 B UBIQUITIN 9606
567 1D3Z 1 A PROTEIN (UBIQUITIN) 9606
568 1C3T 1 A PROTEIN (1D8 UBIQUITIN) 9606
569 1UD7 1 A PROTEIN (UBIQUITIN CORE MUTANT 1D7) 9606
570 1BT0 1 A PROTEIN (UBIQUITIN-LIKE PROTEIN 7, RUB1) 3702