2M8N

HIV-1 capsid monomer structure


Sequence Similarity Clusters for the Entities in PDB 2M8N

Entity #1 | Chains: A
Capsid protein p24 protein, length: 231 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 14 573
95 % 77 84 1
90 % 78 85 1
70 % 73 79 3
50 % 73 79 3
40 % 73 79 3
30 % 73 79 5

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4XFX 1 A HIV-1 capsid protein 11676
2 6AYA 1 A HIV-1 capsid protein 11676
3 4XFZ 1 A HIV-1 capsid protein 11676
4 6AY9 1 A HIV-1 capsid protein UNP residues 133-363 11676
5 4XFY 1 A HIV-1 capsid protein 11676
6 5UPW 1 A, B, C, D, E, F Gag polyprotein UNP residues 133-353 11676
7 5UP4 1 B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S HIV-1 Capsid Protein and spacer peptide 1 11676
8 5MCX 1 A, B, C, D, E, F, G, I, J, K, L, N, O, P, Q, R, S, U, V, W, Y, Z, b, c Capsid protein p24 11676
9 5MCY 1 A, B, F, G, M, N, O, P, Q, R, S, T, Z, b, c, d, e, f, g, h Capsid protein p24 11676
10 5L93 1 A, B, C Capsid protein p24 11676
11 5IRT 1 A, B Capsid protein p24 11676
12 2M8N 1 A Capsid protein p24 11676
13 2M8L 1 A, B Capsid protein p24 11676
14 3DIK 1 A Capsid protein p24 11676