2KOX

NMR residual dipolar couplings identify long range correlated motions in the backbone of the protein ubiquitin


Sequence Similarity Clusters for the Entities in PDB 2KOX

Entity #1 | Chains: A
Ubiquitin protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 398 425 4
95 % 490 524 4
90 % 326 351 19
70 % 552 590 9
50 % 566 606 11
40 % 568 610 13
30 % 583 633 19

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6Q00 1 A Ubiquitin 9606
2 6Q01 1 A, B Ubiquitin 9913
3 5TOG 1 A Polyubiquitin-B 9606
4 5NVG 1 A Polyubiquitin-B 9606
5 5TOF 1 A Polyubiquitin-B 9606
6 4XOF 1 A Ubiquitin 9606
7 3A9J 1 A Ubiquitin 10090
8 3A9J 2 B Ubiquitin 10090
9 5GOB 1 A Ubiquitin 9606
10 5GOB 2 B D-ubiquitin 9606
11 5W46 1 A, B Polyubiquitin-B 9606
12 5GOD 1 A, B Ubiquitin 9606
13 5GOD 2 C, D D-ubiquitin 9606
14 5XVE 2 B Ubiquitin-40S ribosomal protein S27a UNP residues 1-76 9913
15 3NHE 2 B Ubiquitin 9606
16 5DK8 1 A, B Polyubiquitin-B Ubiquitin, UNP residues 2-75 9606
17 1YJ1 1 A, B, C Ubiquitin residues 1-76
18 6SQO 3 C, F Ubiquitin-40S ribosomal protein S27a GSGGS LINKER AT THE N-TERMINUS RESULTED FROM CLONING. G76 IN CHAINS C and F ARE COVALENTLY LINKED TO K85 SIDE CHAIN IN CHAINS B AND E, RESPECTIVELY. 9606
19 5NL4 1 A, B, C Polyubiquitin-C 9606
20 5V1Y 2 C, D Ubiquitin 9606
21 4M0W 2 B Ubiquitin 9913
22 4Y1H 1 A Ubiquitin-40S ribosomal protein S27a K33 linked tri-Ubiquitin. 9913
23 2GBJ 1 A, B Ubiquitin 9606
24 1YIW 1 A, B, C Ubiquitin 9031
25 1OGW 1 A UBIQUITIN LEF IS (4S)-5-FLUORO-L-LEUCINE RESIDUES 1-76 9606
26 2WWZ 1 A, B UBIQUITIN 9913
27 5KYC 2 C Polyubiquitin-B UNP residues 1-76 9606
28 4IUM 2 B Ubiquitin UNP residues 1-75 9606
29 4GU2 1 A Ubiquitin 5759
30 3A9K 1 A Ubiquitin 10090
31 3A9K 2 B Ubiquitin 10090
32 4HK2 1 A, B, C, D Ubiquitin 9606
33 5KYF 2 C Polyubiquitin-B UNP residues 1-76 9606
34 1XD3 2 B, D UBC protein 9606
35 5NLF 1 A, B, C Polyubiquitin-C 9606
36 4ZPZ 1 A, B Polyubiquitin-B ubiquitin, UNP residues 1-73 9606
37 6E2B 1 A, C, E, G, I, P Ubiquitin 9913
38 4UN2 1 A UBIQUITIN 9606
39 5VBT 1 A, B UBH04 32630
40 4PIH 1 A, B Ubiquitin 9606
41 2ZCC 1 A, B, C Ubiquitin 9913
42 6NYO 2 E Ubiquitin 4896
43 4PIJ 1 A, B Ubiquitin 9606
44 5NLI 1 A, B, C Polyubiquitin-C 9606
45 5O6T 2 C, D Polyubiquitin-B A variant of ubiquitin identified from a phage-display library 9606
46 5YT6 1 A, C, E, G Ubiquitin 9606
47 4V3L 2 B, D POLYUBIQUITIN-C G76 IN CHAIN B IS COVALENTLY LINKED TO K85 SIDE CHAIN IN CHAIN A. RESIDUES 77-152 9606
48 4LJO 2 B Polyubiquitin-C unp residues 77-152 9913
49 4FBJ 2 B NEDD8 9606
50 3BY4 2 B Ubiquitin 9606
51 6FDK 2 B Polyubiquitin-B 9606
52 5K9P 1 A Polyubiquitin-B 9606
53 5NLJ 1 A, B, C Polyubiquitin-B 9606
54 5KYD 1 D Polyubiquitin-B UNP residues 1-76 9606
55 4XYZ 1 A, B Polyubiquitin-C UNP residues 77-152 9913
56 3M3J 1 A, B, C, D, E, F Ubiquitin 9913
57 2ZNV 2 B, E Ubiquitin 10090
58 2ZNV 3 C, F Ubiquitin 10090
59 2GBM 1 A, B, C, D Ubiquitin 9606
60 5OXH 1 A Ubiquitin T66V/L67N mutant 9606
61 5EMZ 1 A, C, E Polyubiquitin-B 9606
62 5EMZ 2 B, D, F Polyubiquitin-B 9606
63 6B7M 2 B, C Polyubiquitin-C 9606
64 6HEI 2 B Polyubiquitin-B 9606
65 3VUX 1 A, B, C Polyubiquitin-C Ubiquitin 9606
66 2GBN 1 A Ubiquitin 9606
67 2ZCB 1 A, B, C Ubiquitin 9606
68 5OXI 1 A, B Ubiquitin L67S mutant 9606
69 4K1R 2 B, D Polyubiquitin-C 9606
70 6HPR 2 B, D Polyubiquitin-B Ubiquitin residues 1-76 contains N-terminal GSGGS after TEV cleavage. Chain D Gly76 forms isopeptide linkage with Chain C Lys85. 9606
71 3PRP 2 B, D Ubiquitin 9606 3.4.19.12 | Details
72 4I6N 2 B, D Ubiquitin 9606
73 3V6C 2 B Ubiquitin 9606
74 5AF5 1 A POLYUBIQUITIN-C 9606
75 5J8P 1 A ubiquitin 9606
76 5J8P 2 B D-ubiquitin 9606
77 1NDD 1 A, B, C, D PROTEIN (UBIQUITIN-LIKE PROTEIN NEDD8) HUMAN NEDD8 UBIQUITIN-LIKE PROTEIN MONOMER WITH 4 MOLECULES IN THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT 9606
78 4K7U 1 A, B, C ubiquitin UNP residues 1-76 9606 6.3.2.19 | Details
79 6EI1 2 B Polyubiquitin-B 9606
80 6FGE 2 C Polyubiquitin-B 9606
81 2J7Q 2 B, D UBIQUITIN THE C-TERMINAL GLY 76 IS REPLACED BY THE VINYLMETHYLESTER MOIETY UBIQUITIN FUSED TO VINYLMETHYLESTER, UBVME, RESIDUES 1-75 9606
82 3NS8 1 A, B Ubiquitin 9606
83 5GOJ 1 A Ubiquitin 9606
84 5GOJ 2 B D-ubiquitin 9606
85 6OI4 2 C, D ubiquitin 9606
86 1UBI 1 A UBIQUITIN 9606
87 2D3G 1 A, B ubiquitin 9913
88 5GOC 1 A Ubiquitin 9606
89 5GOC 2 D D-ubiquitin 9606
90 5X3N 1 A Polyubiquitin-B UNP residues 1-76 9606
91 5XIU 2 B Ubiquitin-40S ribosomal protein S27a 10090
92 5TXK 2 B Polyubiquitin-B 9606
93 5WFI 2 C, D Ubiquitin 9606
94 6W9R 1 M, N, O, P, Q, R, S, T, U, V, W, X Ubiquitin 9606
95 1UBQ 1 A UBIQUITIN 9606
96 6B7O 2 B, C Polyubiquitin-C 9606
97 4ZFR 2 B ubiquitin unp residues 77-152 9606
98 4MSM 2 B, D Ubiquitin UNP residues 77-152 9606
99 4HJK 1 A Ubiquitin UNP residues 87-162 9606
100 6GLC 2 B Polyubiquitin-B 9606
101 3N32 1 A Ubiquitin 9606
102 5L8H 2 B Polyubiquitin-B Recombinant expression followed by chemical synthesis. 9606
103 3ONS 1 A Ubiquitin 9606
104 5XU8 2 B Ubiquitin-40S ribosomal protein S27a UNP residues 1-76 9913
105 3MHS 4 D Ubiquitin 9606
106 5M93 1 A, B, C Polyubiquitin-B 9606
107 4K7W 1 A, B, C ubiquitin UNP residues 1-76 9606 6.3.2.19 | Details
108 2HD5 2 B Polyubiquitin residues 1-76 9913
109 5NMC 1 A, B, C Polyubiquitin-C 9606
110 5GOI 1 A, B Ubiquitin 9606
111 5GOI 2 C, D D-ubiquitin 9606
112 1WRD 2 B Ubiquitin 9913
113 5GVI 2 B ubiquitin 10090
114 5GVI 3 C ubiquitin 10090
115 4K7S 1 A, B, C ubiquitin UNP residues 1-73 9606 6.3.2.19 | Details
116 2BKR 2 B NEDDYLIN 9606
117 5CVM 2 B Polyubiquitin-B UNP residues 1-76 9606
118 2FCS 1 A, B Ubiquitin residues 1-76
119 4Q5E 2 B Polyubiquitin 4932 6.3.2.19 | Details
120 5V1Z 2 C, D Ubiquitin 9606
121 3ALB 1 A, B, C, D ubiquitin 9606
122 6GZS 2 B Polyubiquitin-B 9606
123 5D0M 3 B Polyubiquitin-B UNP residues 1-76 9606
124 5XIS 2 B, E Ubiquitin-40S ribosomal protein S27a 10090
125 5XIS 3 C, F Ubiquitin-40S ribosomal protein S27a 10090
126 4PIG 1 A, B, C, D Ubiquitin 9606
127 5X3M 1 A Polyubiquitin-B 9606
128 5X3M 2 D D-ubiquitin D-Ub-S65E-NH2 9606
129 5NL5 1 A, B, C Polyubiquitin-B 9606
130 6SQS 3 C, F Ubiquitin-40S ribosomal protein S27a Contains a GSGGS at the N-terminus resulted from cloning. G76 in Chains C and F form a covalent bond with K85 sidechain in Chains B and E, respectively. 9606
131 6ML1 2 C, E Ubiquitin variant 15.1a This is a Ubv (ubiquitin variant) selected by phage display to bindthe USP15 USP domain with high affinity 9606
132 4MSQ 2 B, D Ubiquitin UNP residues 77-152 9606
133 4LDT 2 B Ubiquitin aldehyde 9606
134 4LDT 4 D Ubiquitin 9606
135 3VUW 1 A, B, C Polyubiquitin-C Ubiquitin 9606
136 3TMP 2 B, D, F, H Polyubiquitin-C Ubiquitin-like 1 9606
137 2QHO 1 A, C, E, G Ubiquitin 9913
138 3H7P 1 A Ubiquitin 9606
139 3H7P 2 B Ubiquitin 9606
140 4WZP 1 A, B, C, D, E, F, G, H ubiquitin phosphorylation at Ser65 UNP residues 1-76 9606
141 3EHV 1 A, B, C Ubiquitin 9606 6.3.2.19 | Details
142 5GO7 1 A Ubiquitin 9606
143 5GO7 2 B D-ubiquitin 9606
144 6CPM 2 E, F Ubiquitin variant 15.1d This is a Ubv (ubiquitin variant) selected by phage display to bind the USP15 USP domain with high affinity 9606
145 1P3Q 2 U, V Ubiquitin 9913
146 2OOB 2 B Ubiquitin 9913
147 5ULF 2 B, D Ubiquitin 9606
148 5KYE 2 C, D Polyubiquitin-B UNP residues 1-76 9606
149 6ISU 2 B Ubiquitin 9606
150 6ISU 3 C Ubiquitin 9606
151 4F8C 2 B, D NEDD8 9606
152 6ULH 3 E Ubiquitin 9606
153 5ULH 2 B Ubiquitin 9606
154 3HM3 1 A, B, C, D Ubiquitin 9606
155 5LRW 2 B, D Polyubiquitin-B Gly76 was replaced with 2-bromoethylamine 9606
156 5GOK 1 A Ubiquitin 9606
157 5GOK 2 B D-ubiquitin 9606
158 4WLR 3 C Polyubiquitin-B 9606
159 3WWQ 1 A, D, G, J Ubiquitin 10090
160 3WWQ 2 B, E, H, K Ubiquitin 10090
161 6K9P 2 G Ubiquitin 9606
162 5JG6 2 B, C Polyubiquitin-B 9606
163 3EFU 1 A Ubiquitin 9606
164 4Q5H 2 B Polyubiquitin 4932 6.3.2.19 | Details
165 5AF4 1 A, B, C, D, E, F, G, H UBIQUITIN ISOPEPTIDE LINKAGES BETWEEN A76 C AND B33 NZ, C76 C AND D33 NZ, E76 C AND F33 NZ 9606
166 4V3K 2 B, E POLYUBIQUITIN-C LYS85 IN CHAINS A AND D IS COVALENTLY LINKED TO GLY76 IN CHAINS B AND E, RESPECTIVELY. RESIDUES 77-152 9606
167 4IG7 2 B Ubiquitin 9606
168 2JF5 1 A, B UBIQUITIN ISO-PEPTIDE LINK BETWEEN A-LYS63 AND B-GLY76 9606
169 5MN9 1 A, B Ubiquitin-40S ribosomal protein S27a 9913
170 5WVO 1 A, B Ubiquitin 9606
171 3V6E 2 B Ubiquitin 9606
172 1UZX 2 B UBIQUITIN 9913
173 5YDR 1 A, D Polyubiquitin-B UNP residues 1-73 9606
174 1S1Q 2 B, D ubiquitin 9606
175 6NYA 2 B, E Ubiquitin residues 77-152 4565
176 6SQR 3 C, F, L Ubiquitin-40S ribosomal protein S27a Contains a GSGGS at the N-terminus resulted from cloning. G76 in Chains C, F, L form a covalent bond with K85 sidechain in Chains B, E, K, respectively. 9606
177 6SQR 6 I Polyubiquitin-C Contains a GSGGS at the N-terminus resulted from cloning. G76 in Chain I form a covalent bond with K85 sidechain in Chain H. 9606
178 6QML 2 B, E Polyubiquitin-B Met 1 substituted with Norleucine (NLE) 9606
179 6QML 3 C, F Polyubiquitin-C 9606
180 4LJP 2 B Polyubiquitin-C unp residues 77-152 9913
181 3VUY 1 A, B, C Polyubiquitin-C Ubiquitin 9606
182 3PHW 2 B, D, F, H Ubiquitin-40S ribosomal protein S27a UNP residues 1-75 9606
183 4PQT 2 B Protein UBBP4 unp residues 77-152 9606
184 5BZ0 2 B Ubiquitin-40S ribosomal protein S27a Ubiquitin from bovine erythrocytes 9913
185 2GBR 1 A, B, C Ubiquitin 9606
186 4XKL 1 A, C Ubiquitin 9606
187 4FJV 2 B, D Polyubiquitin-C 9606
188 6P5B 3 E Ubiquitin 9606
189 5DFL 1 B Ubiquitin 9606
190 2C7N 2 B, D, F, H, J, L UBIQUITIN 9913
191 6UPU 2 B, C, D, F, G, H, J, K, L, N, O, P Ubiquitin 9606
192 5HPS 2 B Ubiquitin variant P1.1 9606
193 5GOH 1 A Ubiquitin 9606
194 5GOH 2 D D-ubiquitin 9606
195 3ZNI 4 D, H, L, P POLYUBIQUITIN-C CARBONYL CARBON OF G76 IN CHIANS D, H, L AND P FORMS AN ISOPEPTIDE LINKAGE WITH THE SIDECHAIN OF K85 IN CHAINS C, G, K AND O, RESPECTIVELY. GSGGS LINKER AT THE N- TERMINUS OF PROTEIN RESULTED FROM CLONING RESIDUES 77-152 9606
196 2G45 2 B, E Ubiquitin 9606
197 6AQR 4 D Polyubiquitin-C 9606
198 5MNJ 2 B, F Polyubiquitin-B gsggs linker at the N-terminus resulted from cloning. G76 in chain B is covalently linked to K85 side chain in Chain A. 9606
199 5ZQ3 2 C, D Ubiquitin 9606
200 5ZQ4 2 C, D ubiquitin 9606
201 4GSW 1 A, B Ubiquitin 5759
202 4RF1 2 B Ubiquitin-60S ribosomal protein L40 UNP residues 1-75 9606
203 1SIF 1 A ubiquitin 9606
204 5JBY 1 A, C, E ubiquitin 9606
205 5JBY 2 B, D, F D-ubiquitin 9606
206 5IFR 2 B Polyubiquitin-B 9606
207 2IBI 2 B Ubiquitin 9606
208 5L6H 2 B, D, E Ubiquitin-40S ribosomal protein S31 4932
209 6W9S 2 B Ubiquitin 9606
210 6D4P 2 C Ubiquitin Variant Ubv.D1.1 9606
211 6JB7 1 B Ubiquitin 9606
212 5GOG 1 A Ubiquitin 9606
213 5GOG 2 B D-ubiquitin 9606
214 2GBK 1 A, B, C, D Ubiquitin 9606
215 4AUQ 3 C, F POLYUBIQUITIN-C UBIQUITIN, RESIDUES 1-76 9606
216 4NNJ 2 B, D, E Uba1 UNP residues 1-76 4932
217 4Z9S 1 A, B, C, D Ubiquitin-40S ribosomal protein S27a UNP RESIDUES 1-76 9913
218 6DGF 2 B Polyubiquitin-B 9606
219 2XEW 1 A, B, C, D, E, F, G, H, I, J, K, L UBIQUITIN UBIQUITIN POLYMER LINKED THROUGH LYS11 IN AN ISOPEPTIDE LINKAGE 9606
220 2WDT 2 B, D UBIQUITIN C-TERMINAL GLY76 OF WILDTYPE UBIQUITIN IS REPLACED BY A VINYL METHYLESTER MOIETY (UBVME) RESIDUES 1-75 9606
221 1XT9 2 B Neddylin 9606
222 1AAR 1 A, B DI-UBIQUITIN 9913
223 4AP4 3 C, F UBIQUITIN C ISOPEPTIDE AMIDE LINKED TO UBCH5A (CHAIN B AND CHAIN E) RESIDUES 76-152 9606
224 4UEL 2 B POLYUBIQUITIN-B GLY76 OF UBIQUITIN IS REPLACED BY GLY-AYE THAT IS COVALENTLY LINKED TO THE ACTIVE SITE CYS88 OF UCH-L5 9606
225 4II2 2 B Ubiquitin-60S ribosomal protein L40 UNP residues 1-76 4896
226 6OQ1 1 A, B Ubiquitin 9606
227 6OQ1 2 C, D Ubiquitin 9606
228 6OQ1 3 E, F Ubiquitin 9606
229 6RYA 2 B, D, F Polyubiquitin-C 9606
230 4ZFT 2 B, D Polyubiquitin-B unp residues 77-152 9606
231 2WX0 1 A, B, E, F UBIQUITIN 9913
232 3A1Q 1 A, D Ubiquitin 10090
233 3A1Q 2 B, E Ubiquitin 10090
234 5HPL 2 C, D Ubiquitin variant R5.4 9606
235 5TR4 2 B, D Ubiquitin 9913
236 4BOS 2 C, E POLYUBIQUITIN-C RESIDUES 1-76 9606
237 3H7S 1 A, B Ubiquitin 9606
238 3C0R 2 B, D Ubiquitin 9606
239 5AIU 3 C, F POLYUBIQUITIN-C CHAIN B COVALENTLY LINKED TO CHAINS C, CHAIN E IS COVALENTLY LINKED TO CHAIN F UNP RESIDUES 1-76 9606
240 6PGV 2 B Polyubiquitin-B 9606
241 4S22 1 A, B, C, D Ubiquitin residues 77-152 9913
242 2C7M 2 B UBIQUITIN 9913
243 1TBE 1 A, B TETRAUBIQUITIN 9606
244 6NXK 1 A, B Polyubiquitin-C 9606
245 3PT2 2 B Ubiquitin B 9606
246 5VZW 2 C, D Ubiquitin 9606
247 3PRM 2 B, D Ubiquitin 9606 3.4.19.12 | Details
248 6KG6 2 C Ubiquitin-40S ribosomal protein S27a 9606
249 4R62 2 B Ubiquitin-40S ribosomal protein S27a Ubiquitin 9606
250 5EYA 3 C, D Polyubiquitin-B UNP residues 1-76 9606
251 5GO8 1 A ubiquitin 9606
252 5GO8 2 B D-ubiquitin 9606
253 3A33 2 B Ubiquitin 9606
254 3VHT 3 C Ubiquitin 10090
255 5XIT 1 D, F Ubiquitin-40S ribosomal protein S27a 10090
256 5XIT 3 B, H Ubiquitin-40S ribosomal protein S27a 10090
257 6ASR 1 A, C Ubiquitin residues 1-76 9606
258 2FCN 1 A, B Ubiquitin residues 1-76
259 4DHJ 2 B, F, J, M Ubiquitin aldehyde 9606
260 4DHJ 3 D, H Ubiquitin 9606
261 3ZNH 2 B POLYUBIQUITIN-B GLY76 IS REPLACED WITH A PROPARGYL GROUP 9606
262 4BBN 2 C POLYUBIQUITIN-B RESIDUES 1-76 9913
263 4BBN 3 F POLYUBIQUITIN-B RESIDUES 229-304 9913
264 4NQL 2 B Ubiquitin 10090
265 4NQL 3 C Ubiquitin 10090
266 6NJG 2 C Polyubiquitin-B 9606
267 1NBF 2 C, D Ubiquitin aldehyde 9606
268 2O6V 1 A, C, E, G Ubiquitin 9606
269 2O6V 2 B, F Ubiquitin 9606
270 2O6V 3 D, H Ubiquitin 9606
271 3OFI 2 C, D Ubiquitin 9606
272 6UMS 3 E Ubiquitin 9606
273 3AUL 1 A, B Polyubiquitin-C Ubiquitin 9606
274 3UGB 2 B Polyubiquitin-C unp residues 1-76 9606
275 5JBV 1 A Ubiquitin 9606
276 5JBV 2 B D-ubiquitin 9606
277 5X3O 1 A Polyubiquitin-B UNP residues 1-76 9606
278 5X3O 2 D D-ubiquitin 9606
279 5ULK 2 B Ubiquitin 9606
280 5ZQ5 2 B, D Ubiquitin 9606
281 6FX4 2 B, D Polyubiquitin-B 9606
282 3NOB 1 A, B, C, D, E, F, G, H Ubiquitin 9606
283 6CRN 2 E, F, G, H Ubiquitin variant 15.2 This is a Ubv (ubiquitin variant) selected by phage display to bind the USP15 USP domain with high affinity 9606
284 6D68 2 C, D Ubv.G1.1 9606
285 6QK9 1 A, B, C, D, E, F, G, H, I, J, K, L Polyubiquitin-B 9606
286 3IFW 2 B Ubiquitin 9606
287 3N3K 2 B Ubiquitin 9606
288 6A6I 2 B, D Polyubiquitin-B UNP residues 1-76 9606
289 6A6I 3 F, H Polyubiquitin-B UNP residues 1-77 9606
290 2FCM 1 A, B Ubiquitin residues 1-76
291 6JWI 1 G, I Ubiqutin 10090
292 4KSK 2 C, D Polyubiquitin-C unp residues 76-152 9606
293 5L6J 2 B, D Ubiquitin-40S ribosomal protein S31 4932
294 5HPK 2 B Ubiquitin variant NL.1 9606
295 5OHL 2 I, J, K, L, M, N, O, P Polyubiquitin-B 9606
296 3I3T 2 B, D, F, H Ubiquitin 9606
297 5FER 3 C, F Ubiquitin-40S ribosomal protein S27a 9913
298 5IBK 3 C, F Polyubiquitin-B UNP residues 75-150 9606
299 5OHK 2 B Polyubiquitin-B 9606
300 1CMX 2 B, D PROTEIN (UBIQUITIN YUH1-UBAL) UBIQUITIN C-TERMINUS MODIFIED TO AN ALDEHYDE ALL 9606 3.1.2.15 | Details
301 6JKY 3 C, F Ub 48269
302 3OJ3 1 A, B, C, D, E, F, G, H Ubiquitin Ubiquitin, UNP residues 1-76 9606
303 5N38 2 B Polyubiquitin-B Ser65 is phosphorylated 9606
304 4HCP 2 B NEDD8 unp residues 1-76 9606
305 3O65 2 B, D, F, H Ubiquitin 9606
306 5CRA 2 C, D Polyubiquitin-B UNP residues 1-75 9606
307 6IF1 2 C, D Ubiquitin 9606
308 5U4P 3 C Ubiquitin-40S ribosomal protein S31 4932
309 5L6I 2 B, D, E Ubiquitin-40S ribosomal protein S31 4932
310 6O82 2 B, D Ubiquitin-60S ribosomal protein L40 residues 1-76 4896
311 5XPK 1 A Ubiquitin 9606
312 5XPK 2 B D-ubiquitin 9606
313 5XDP 1 B D-ubiquitin 9606
314 5XDP 2 A ubiquitin-B K11/48-branched teraubiquitin 9606
315 5O76 3 E, F UbV.pCBL ubiquitin variant 9606
316 5D0K 3 B, E, H, K Polyubiquitin-B UNP residues 1-76 9606
317 5OHV 1 A, C Ubiquitin 9606
318 5KNL 2 B, E Ubiquitin 84753
319 4I6L 2 B Ubiquitin UNP residues 77-150 9606
320 5TUT 2 B Ubiquitin 9606
321 3OLM 2 D Ubiquitin 4932
322 3CMM 2 B, D Ubiquitin 559292
323 4MDK 2 E, F, G, H Ubiquitin UNP residues 76-152 9606
324 5N2W 2 B Polyubiquitin-B Ser65 is phosphorylated to give SEP65 9606
325 7BXG 3 D Polyubiquitin-C 9606
326 4MM3 1 A Ubiquitin UNP residues 1-76 9606
327 2FIF 1 A, C, E Ubiquitin 9913
328 5JQS 2 D Ubiquitin-40S ribosomal protein S27a 9913
329 5YDK 2 B, E, H, K Ubiquitin-40S ribosomal protein S27a UNP residues 1-76 9606
330 5YDK 3 C, D, I, J Ubiquitin-40S ribosomal protein S27a UNP residues 1-76 9606
331 2XBB 2 C, D UBIQUITIN 9913
332 2GMI 3 C Ubiquitin 9606
333 4HCN 2 B Polyubiquitin unp RESIDUES 1-76 4932
334 5J26 1 B Ubiquitin Variant i53 9606
335 6KL4 3 C Ub 9606
336 3DVG 3 X Ubiquitin D77 9606
337 3DVG 4 Y Ubiquitin 9606
338 1WR6 2 E, F, G, H ubiquitin 9913
339 3LDZ 1 E, F, G Ubiquitin 9913
340 3PTF 2 C, D Polyubiquitin-B Ubiquitin 9606
341 6BVA 3 A, B Polyubiquitin-B 9606
342 5ZQ7 2 B, D Ubiquitin 9606
343 6XAA 2 B Ubiquitin-propargylamide 9606
344 3RUL 1 A, B, C, D Ubiquitin 9606
345 5BNB 2 E, F, G, I Polyubiquitin-B 9606
346 6K2U 1 B Polyubiquitin-C 9606
347 5LRX 2 B, D Polyubiquitin-B Gly76 was replaced with propargylamide 9606
348 5CAW 2 B, D Polyubiquitin-B phosphorylated at Ser65 Gly76 exchanged with chemical probe, bromopropylamine. The bromide was lost during the coupling. 9606
349 4XOK 1 A, B, C Ubiquitin 9606
350 3MTN 2 B, D UBIQUITIN VARIANT UBV.21.4 9606
351 5ZQ6 2 B, D Ubiquitin 9606
352 5LRV 2 B Polyubiquitin-B Lys11 was replaced with a diaminobutyric acid (DAB) residue 9606
353 5LRV 3 C Polyubiquitin-B Gly76 was replaced with a ligation handle for diubiquitin probe generation 9606
354 6S53 2 D, F, J, L Polyubiquitin-C 9606
355 3DVN 3 U, X Ubiquitin D77 9606
356 3DVN 4 V, Y Ubiquitin 9606
357 5L8W 3 C Polyubiquitin-B Recombinant expression followed by chemical synthesis 9606
358 6KFP 3 D Ubiquitin-40S ribosomal protein S27a 9606
359 1F9J 1 A, B TETRAUBIQUITIN 9606
360 6BYH 3 C, D, H Polyubiquitin-B 9606
361 6NXL 1 A, B, C, D, E, F, G, H Polyubiquitin-B 9606
362 2FID 1 A Ubiquitin 9913
363 5OHP 2 B, C Polyubiquitin-B 9606
364 4HXD 1 A, C Polyubiquitin-C 9606 3.4.19.12 | Details
365 1YD8 1 U, V UBIQUIN 9913
366 4BOZ 2 B, C, E UBIQUITIN-C 9606
367 5HPT 2 B, E, H Ubiquitin variant P2.3 9606
368 3WXG 2 B, E Ubiquitin 10090
369 3WXG 3 C, F Ubiquitin UNP residues 1-72 10090
370 6CP2 3 C Polyubiquitin-B 9606
371 4XKH 1 A, B, D, F, G, I Polyubiquitin-C UNP RESIDUES 77-152 9913
372 3IHP 2 C, D Ubiquitin 9606
373 6D6I 3 C, F Ubv.V1.1 9606
374 5LN1 2 U Polyubiquitin-B 9606
375 3K9P 2 B Ubiquitin 9606
376 3DBH 3 I, J, K, L NEDD8 9606
377 4BVU 3 C UBIQUITIN OXYESTER LINK BETWEEN G76 AND UBCH5C S85 9606
378 6JB6 1 B Ubiquitin 9606
379 5CVN 3 D Polyubiquitin-B UNP residues 1-76 9606
380 3JSV 1 A Ubiquitin 9606
381 3JSV 2 B Ubiquitin 9606
382 3DBL 3 I, J, K, L NEDD8 9606
383 3TBL 2 D, E Ubiquitin 9606
384 2HTH 1 A Ubiquitin 9606
385 3KW5 2 B Ubiquitin 9606
386 6EQI 1 A Ubiquitin 9606
387 5E6J 2 B, E ubiquitin 32630
388 5E6J 3 C, F Polyubiquitin-B 32630
389 2NVU 4 I, J NEDD8 9606
390 2XK5 1 A UBIQUITIN 9606
391 2XK5 2 B UBIQUITIN 9606
392 6OAM 2 C, D Ubiquitin 9606
393 4JQW 2 C Polyubiquitin-C Ubiquitin 9606
394 4RF0 2 B Ubiquitin-60S ribosomal protein L40 UNP residues 1-75 9606
395 3KVF 2 B Ubiquitin 9606
396 6FYH 2 B Polyubiquitin-B 9606
397 6O83 2 B, D Ubiquitin-60S ribosomal protein L40 residues 1-75 4896
398 5AF6 1 A, B, C, D, E UBIQUITIN ISOPEPTIDE BONDS ACROSS BETWEEN CHAINS, A76 C AND D33 NZ, B76 C AND A33 NZ, C76C AND B33 NZ, E76 C AND C33 NZ. ISOPEPTIDE BOND ACROSS THE ASU FOR, D76 C AND E33 NZ SYMM 9606
399 3H1U 1 A, B Ubiquitin 9913
400 6HEK 2 B, D Polyubiquitin-B 9606
401 5JTJ 2 B Polyubiquitin-B 9606
402 2WX1 1 A, B UBIQUITIN 9913
403 6UMP 1 E Ubiquitin 9606
404 4WUR 2 B Polyubiquitin-B UNP residues 1-76 9606
405 4II3 2 B, D Ubiquitin-60S ribosomal protein L40 UNP residues 1-76 4896
406 5C7J 2 C, D Polyubiquitin-C UNP residues 1-74 9606
407 4S1Z 1 A, B, C, D, E Ubiquitin residues 1-76 9606
408 6DC6 2 B, D Ubiquitin 9606
409 4XOL 1 A, B Ubiquitin 9606
410 5JP3 2 B, D, F, H Polyubiquitin-B 9606
411 4P4H 3 S, T, U, W, X Ubiquitin-60S ribosomal protein L40 9606
412 3GZN 3 I, J NEDD8 9606
413 5O44 1 A, E Ubiquitin 7370
414 5O44 2 B, C Polyubiquitin-B 9606
415 5O44 3 D, F Polyubiquitin-B 9606
416 3PHD 2 E, F, G, H Polyubiquitin 9606
417 3DBR 3 I, J, K, L NEDD8 9606
418 5YIK 2 C, D, F ubiquitin UNP RESIDUES 1-76 9606
419 5ZBU 3 E Ubiquitin 9606
420 3N30 1 A, B Ubiquitin 9606
421 4P5O 5 H, K NEDD8 9606
422 3ZLZ 1 A, B UBIQUITIN TRI-UBIQUITIN CHAIN LINKED VIA LYS6. K48R IN BOTH MOLECULES. ISOPEPTIDE LINKAGES ARE NOT RESOLVED. 9606
423 6W9D 3 C, F, I Ubiquitin Linked to Ube2d2 via isopeptide bond between G76 of ubiquitin and Lys85 of Ube2d2 9606
424 3JVZ 3 X, Y Ubiquitin 9606
425 4DHZ 2 B Ubiquitin aldehyde 9606
426 4DHZ 3 E Ubiquitin 9606
427 5YIJ 2 C, D, G Ubiquitin UNP RESIDUES 1-76 9606
428 3DQV 1 A, B NEDD8 NEDD8 C-terminus covalently linked to Cul5 Lys724 9606
429 5UDH 3 E Ubiquitin C variant Hexa-his N-terminal tagged protein UNP residues 17-92 9606
430 5AIT 3 C, F POLYUBIQUITIN-C UNP RESIDUES 1-76 9913
431 5O6S 1 A, B, C, D, E, F Polyubiquitin-B Variant of ubiquitin identified from phage-display 9606
432 3VFK 1 A ubiquitin, C-terminal fused by Cys-Lys-D-Ala-D-Ala 9606
433 5C7M 2 B, C Polyubiquitin-C UNP residues 1-75 9606
434 1R4M 3 I, J, K, L Ubiquitin-like protein NEDD8 9606
435 3JW0 3 X, Y Ubiquitin 9606
436 4LCD 3 E, F Ubiquitin UNP residues 1-75 9606
437 6DJ9 2 G, H, I, J, K, L Ubiquitin Variant UbV 15.D The following is a variant of ubiquitin selected by phage display to bind to the USP15 N-terminus 9606
438 4DDG 2 D, E, F, G, H, I, M, N, O, P, Q, R Polyubiquitin-C 9606
439 5JTV 2 B, D, F, H Polyubiquitin-B 9606
440 5OHN 2 B, D Polyubiquitin-B 9606
441 5TTE 3 F ubiquitin unp residues 1-76 4565
442 2FCQ 1 A, B Ubiquitin residues 1-76 9031
443 3EEC 1 A, B Ubiquitin 9606
444 5VNZ 3 C, F Ubiquitin 9606
445 6H4H 2 C, D Polyubiquitin-B 9606
446 4NQK 2 E, F, G, H, I, J Ubiquitin UNP residues 76-152 9606
447 6C16 3 D, H Polyubiquitin-B 9606
448 4DDI 2 D, E, F, G, H, I Polyubiquitin-C 9606
449 5H7S 1 E, F Ubiquitin-like 1 9606
450 5EDV 3 E, F, G, H Polyubiquitin-B UNP residues 1-76 9606
451 5CVO 3 C, F Polyubiquitin-B UNP residues 1-76 9606
452 4UF6 2 B, E, H, K POLYUBIQUITIN-B GLY76 OF UBIQUITIN IS REPLACED BY GLY-AYE THAT IS COVALENTLY LINKED TO THE ACTIVE SITE CYS88 OF UCH- L5 9606
453 5OHM 1 A, C, E, G, I, K Polyubiquitin-C 9606
454 4ZUX 10 X, c, h, m Polyubiquitin-B 9606
455 2DX5 2 B Ubiquitin 9913
456 3OJ4 2 B, E Ubiquitin Ubiquitin, UNP residues 1-76 9606
457 1R4N 3 I, J, K, L Ubiquitin-like protein NEDD8 9606
458 5VO0 3 C, F Ubiquitin 9606
459 6DJW 2 B Ubiquitin 9913
460 2AYO 2 B Ubiquitin 9606
461 5KHY 1 A Polyubiquitin-B 9606
462 5KHY 2 B Polyubiquitin-B 9606
463 6DJX 2 B Ubiquitin 9913
464 4JIO 2 U Ubiquitin 9606
465 4WHV 3 A, F, G, L Polyubiquitin-B unp residues 1-76 9606
466 6VEN 7 K Ubiquitin 9606
467 6TTU 4 N NEDD8 Residue 1, Ser, comes from the linker. NEDD8 residue starts from MET. 9606
468 6TTU 7 U Polyubiquitin-C 9606
469 6VAE 3 C, D Ubiquitin isopeptide bond between C-terminus of ubiquitin (chain C) and Lys523 Nz of FANCI (chain A); isopeptide bond between C-terminus of ubiquitin (chain D) and Lys561 Nz of FANCD2 (chain B) 9606
470 6VAF 3 D Ubiquitin 9606
471 6TNF 3 C Polyubiquitin-C 9606
472 6V5D 1 A Ubiquitin 9606
473 6UYI 1 C Ubiquitin 9606
474 6UYI 2 D Ubiquitin 9606
475 6UYJ 1 C Ubiquitin 9606
476 6UYJ 2 D Ubiquitin 9606
477 6TBM 15 R Polyubiquitin-B 9606
478 6T9L 12 O Polyubiquitin-C 9606
479 6UH5 11 Q Ubiquitin 9606
480 6KOW 1 A Polyubiquitin-B 9606
481 6KOX 1 A Polyubiquitin-B 9606
482 6KNA 1 A Viral ubiquitin 307456
483 6KIU 11 O Ubiquitin 9606
484 6KIV 9 O Ubiquitin 9606
485 6KIW 9 O Ubiquitin 9606
486 6K4I 1 A ubiquitin 9606
487 6OQ2 1 B Ubiquitin 9606
488 6OQ2 2 D Ubiquitin 9606
489 6OQ2 3 E Ubiquitin 9606
490 6R7F 14 N NEDD8 9606
491 6R7I 9 N NEDD8 9606
492 6OB1 1 A Ubiquitin 9606
493 6OB1 2 B Ubiquitin 9606
494 6OA9 2 H, J, K Ubiquitin 4932
495 6OAA 3 H Ubiquitin 4932
496 6O96 8 L Polyubiquitin-B 9606
497 6JMA 7 Y Ubiquitin 9606
498 6J99 7 L Ubiquitin 9606
499 6NQA 7 L Ubiquitin 9606
500 6NOG 5 L Ubiquitin 9606
501 6NN6 8 L Ubiquitin 9606
502 6QF8 1 A Polyubiquitin-B 9606
503 6NJ9 5 L Ubiquitin 9606
504 6N13 2 D ubiquitin 9606
505 6N13 4 A phosphoubiquitin 9606
506 6MSB 19 u, w Ubiquitin 9606
507 6MSD 19 u, w Ubiquitin 9606
508 6MSE 19 u Ubiquitin 9606
509 6MSG 19 u Ubiquitin 9606
510 6FTX 8 N, O Polyubiquitin-B 9606
511 5ZD0 1 A ubiquitin 9606
512 5YMY 1 A Ubiquitin 9606
513 5YMY 2 B Ubiquitin 9606
514 5VZM 1 A Ubiquitin UNP residues 1-76 9606
515 5XK4 1 A Polyubiquitin-B UNP residues 1-76 9606
516 5XK5 1 A Polyubiquitin-B UNP residues 1-76 9606
517 5VEY 2 B Polyubiquitin-B 9606
518 5VF0 1 A Polyubiquitin-B 9606
519 5XBO 1 A Polyubiquitin-B UNP residues 1-76 9606
520 5UJL 1 A, B Ubiquitin residues 1-76 9606
521 5UJN 1 A, B Ubiquitin 9606
522 5GJQ 34 y Polyubiquitin-B UNP RESIDUES 1-76 9606
523 5KGF 8 M, O Ubiquitin 9606
524 2NBD 1 A entity 9606
525 2NBE 1 A entity 9606
526 2N7K 1 A NEDD8 9606
527 5A5B 9 9 UBIQUITIN ALDEHYDE 9606
528 2N3U 2 B, C Ubiquitin-60S ribosomal protein L40 UNP residues 1-76 9606
529 2N3V 2 B, C Ubiquitin-60S ribosomal protein L40 UNP residues 1-76 9606
530 2N3W 2 B, C Ubiquitin-60S ribosomal protein L40 UNP residues 1-76 9606
531 2N2K 1 A ubiquitin 9606
532 2N2K 2 B ubiquitin 9606
533 2N13 2 B Ubiquitin 9606
534 2N13 3 C Ubiquitin 9606
535 2MWS 1 A Ubiquitin UNP residues 1-76 9606
536 2MUR 2 B Ubiquitin 9606
537 2MSG 1 A Ubiquitin UNP residuse 1-72 9606
538 2MRO 1 A Polyubiquitin-B Human Ubiquitin 9606
539 2MRE 1 A Polyubiquitin-C unp residues 1-76 9606
540 2MOR 1 A Ubiquitin UNP residues 1-76 9606
541 2MJB 1 A Ubiquitin-60S ribosomal protein L40 Ubiquitin-like 3 domain 9606
542 2MJ5 1 A Polyubiquitin-C UNP residuses 1-76 9606
543 2MI8 1 A Ubiquitin 9606
544 2RU6 1 A Ubiquitin 9606
545 2MCN 2 B Ubiquitin UNP residues 1-76 9606
546 2MBQ 1 A, B Ubiquitin UNP residues 1-76 9606
547 2MBO 1 A, B Ubiquitin UNP residues 1-76 9606
548 2MBH 2 A Ubiquitin 9606
549 2MBB 2 B Polyubiquitin-B UNP P0CG47 residues 1-76 9606
550 2M0X 1 A engineered ubiquitin variant 9606
551 2LZ6 1 A Ubiquitin 9606
552 2LVO 1 A Ubiquitin 9606
553 2LVP 1 A, B Ubiquitin 9606
554 2LVQ 1 A, B Ubiquitin 9606
555 2RSU 1 A Ubiquitin 9606
556 2LJ5 1 A Ubiquitin 9606
557 2LD9 1 A Ubiquitin 9606
558 2L3Z 1 A Ubiquitin UNP Residues 1-76 9606
559 2L0T 1 A Ubiquitin 9606
560 2L0F 1 A Ubiquitin 9606
561 2L00 2 B Ubiquitin ubiquitin core domain 4932
562 2RR9 1 A, B ubiquitin 9606
563 2KWV 2 B Ubiquitin 9606
564 2KWU 2 B Ubiquitin 9606
565 2KTF 1 A Ubiquitin 9606
566 2KOX 1 A Ubiquitin 9606
567 2KO3 1 A NEDD8 9606
568 2KN5 1 A Ubiquitin 9606
569 2KLG 1 A Ubiquitin 9606
570 2KJH 2 B Ubiquitin 9606
571 2KHW 2 B Ubiquitin 9606
572 2KDE 2 B, C Ubiquitin 8355
573 2KDF 2 B, C Ubiquitin 9606
574 2K8B 1 A Ubiquitin 9606
575 2K8C 1 A Ubiquitin 9606
576 2K6D 2 B Ubiquitin ubiquitin 9606
577 2K39 1 A Ubiquitin 8355
578 2JZZ 1 A Ubiquitin 9606
579 2JY6 1 A Ubiquitin protein 9606
580 2JWZ 1 A Ubiquitin 4932
581 2JVC 1 A ubiquitin_like protein
582 2JT4 2 B Ubiquitin SH3 domain sequence database residues 350-420 4932
583 2Z59 2 B Ubiquitin 9606
584 2JRI 2 B, C UBC protein sequence database residues 318-469 9606
585 2PE9 1 A, B Ubiquitin 9606
586 2PEA 1 A, B Ubiquitin 9606
587 2NR2 1 A Ubiquitin 9606
588 2G3Q 2 B Ubiquitin 4932
589 2DEN 2 B Polyubiquitin-B 9606
590 2FUH 2 B Ubiquitin Ubiquitin 10116
591 1ZW7 1 A Ubiquitin 4932
592 1ZGU 2 B Ubiquitin 9606
593 2BGF 1 A, B DI-UBIQUITIN ISOPEPTIDE BOND BETWEEN GLY76A AND LYS48B 9606
594 1XQQ 1 A ubiquitin 9606
595 1WR1 1 A Ubiquitin 4932
596 1V80 1 A Ubiquitin/60s ribosomal protein L40 fusion 9913
597 1V81 1 A Ubiquitin/60s ribosomal protein L40 fusion 9913
598 1Q5W 2 B Ubiquitin 9606
599 1Q0W 2 B Ubiquitin 4932
600 1OTR 2 B Ubiquitin 4932
601 1G6J 1 A UBIQUITIN 9606
602 1FXT 2 B UBIQUITIN 9606
603 1D3Z 1 A PROTEIN (UBIQUITIN) 9606
604 1C3T 1 A PROTEIN (1D8 UBIQUITIN) 9606
605 1UD7 1 A PROTEIN (UBIQUITIN CORE MUTANT 1D7) 9606
606 1BT0 1 A PROTEIN (UBIQUITIN-LIKE PROTEIN 7, RUB1) 3702