2KOX

NMR residual dipolar couplings identify long range correlated motions in the backbone of the protein ubiquitin


Sequence Similarity Clusters for the Entities in PDB 2KOX

Entity #1 | Chains: A
Ubiquitin protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 398 425 4
95 % 490 524 4
90 % 326 351 19
70 % 552 590 9
50 % 566 606 11
40 % 568 610 13
30 % 583 633 19

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6Q00 1 A Ubiquitin 9606
2 6Q01 1 A, B Ubiquitin 9913
3 5TOG 1 A Polyubiquitin-B 9606
4 5NVG 1 A Polyubiquitin-B 9606
5 5TOF 1 A Polyubiquitin-B 9606
6 4XOF 1 A Ubiquitin 9606
7 3A9J 1 A Ubiquitin 10090
8 3A9J 2 B Ubiquitin 10090
9 5GOB 1 A Ubiquitin 9606
10 5GOB 2 B D-ubiquitin 9606
11 5W46 1 A, B Polyubiquitin-B 9606
12 5GOD 1 A, B Ubiquitin 9606
13 5GOD 2 C, D D-ubiquitin 9606
14 5XVE 2 B Ubiquitin-40S ribosomal protein S27a UNP residues 1-76 9913
15 3NHE 2 B Ubiquitin 9606
16 5DK8 1 A, B Polyubiquitin-B Ubiquitin, UNP residues 2-75 9606
17 1YJ1 1 A, B, C Ubiquitin residues 1-76
18 6SQO 3 C, F Ubiquitin-40S ribosomal protein S27a GSGGS LINKER AT THE N-TERMINUS RESULTED FROM CLONING. G76 IN CHAINS C and F ARE COVALENTLY LINKED TO K85 SIDE CHAIN IN CHAINS B AND E, RESPECTIVELY. 9606
19 5NL4 1 A, B, C Polyubiquitin-C 9606
20 5V1Y 2 C, D Ubiquitin 9606
21 4M0W 2 B Ubiquitin 9913
22 4Y1H 1 A Ubiquitin-40S ribosomal protein S27a K33 linked tri-Ubiquitin. 9913
23 2GBJ 1 A, B Ubiquitin 9606
24 1YIW 1 A, B, C Ubiquitin 9031
25 1OGW 1 A UBIQUITIN LEF IS (4S)-5-FLUORO-L-LEUCINE RESIDUES 1-76 9606
26 2WWZ 1 A, B UBIQUITIN 9913
27 5KYC 2 C Polyubiquitin-B UNP residues 1-76 9606
28 4IUM 2 B Ubiquitin UNP residues 1-75 9606
29 4GU2 1 A Ubiquitin 5759
30 3A9K 1 A Ubiquitin 10090
31 3A9K 2 B Ubiquitin 10090
32 4HK2 1 A, B, C, D Ubiquitin 9606
33 5KYF 2 C Polyubiquitin-B UNP residues 1-76 9606
34 1XD3 2 B, D UBC protein 9606
35 5NLF 1 A, B, C Polyubiquitin-C 9606
36 4ZPZ 1 A, B Polyubiquitin-B ubiquitin, UNP residues 1-73 9606
37 6E2B 1 A, C, E, G, I, P Ubiquitin 9913
38 4UN2 1 A UBIQUITIN 9606
39 5VBT 1 A, B UBH04 32630
40 6FFA 2 B Ubiquitin-like protein ISG15 9606
41 4PIH 1 A, B Ubiquitin 9606
42 2ZCC 1 A, B, C Ubiquitin 9913
43 6NYO 2 E Ubiquitin 4896
44 4PIJ 1 A, B Ubiquitin 9606
45 5NLI 1 A, B, C Polyubiquitin-C 9606
46 3PHX 2 B Ubiquitin-like protein ISG15 UNP residues 79-156 9606
47 2WYQ 1 A UV EXCISION REPAIR PROTEIN RAD23 HOMOLOG A UBIQUITIN-LIKE DOMAIN, RESIDUES 1-82 9606
48 5O6T 2 C, D Polyubiquitin-B A variant of ubiquitin identified from a phage-display library 9606
49 5YT6 1 A, C, E, G Ubiquitin 9606
50 4V3L 2 B, D POLYUBIQUITIN-C G76 IN CHAIN B IS COVALENTLY LINKED TO K85 SIDE CHAIN IN CHAIN A. RESIDUES 77-152 9606
51 4LJO 2 B Polyubiquitin-C unp residues 77-152 9913
52 4FBJ 2 B NEDD8 9606
53 3BY4 2 B Ubiquitin 9606
54 6FDK 2 B Polyubiquitin-B 9606
55 5K9P 1 A Polyubiquitin-B 9606
56 5NLJ 1 A, B, C Polyubiquitin-B 9606
57 5KYD 1 D Polyubiquitin-B UNP residues 1-76 9606
58 4XYZ 1 A, B Polyubiquitin-C UNP residues 77-152 9913
59 3M3J 1 A, B, C, D, E, F Ubiquitin 9913
60 2ZNV 2 B, E Ubiquitin 10090
61 2ZNV 3 C, F Ubiquitin 10090
62 2GBM 1 A, B, C, D Ubiquitin 9606
63 5OXH 1 A Ubiquitin T66V/L67N mutant 9606
64 5EMZ 1 A, C, E Polyubiquitin-B 9606
65 5EMZ 2 B, D, F Polyubiquitin-B 9606
66 6B7M 2 B, C Polyubiquitin-C 9606
67 6HEI 2 B Polyubiquitin-B 9606
68 3VUX 1 A, B, C Polyubiquitin-C Ubiquitin 9606
69 2GBN 1 A Ubiquitin 9606
70 2ZCB 1 A, B, C Ubiquitin 9606
71 5OXI 1 A, B Ubiquitin L67S mutant 9606
72 4K1R 2 B, D Polyubiquitin-C 9606
73 6HPR 2 B, D Polyubiquitin-B Ubiquitin residues 1-76 contains N-terminal GSGGS after TEV cleavage. Chain D Gly76 forms isopeptide linkage with Chain C Lys85. 9606
74 3PRP 2 B, D Ubiquitin 9606 3.4.19.12 | Details
75 4I6N 2 B, D Ubiquitin 9606
76 2ZEQ 1 A E3 ubiquitin-protein ligase parkin Ubiquitin-like domain 10090 2.3.2.31 | Details
77 3V6C 2 B Ubiquitin 9606
78 5AF5 1 A POLYUBIQUITIN-C 9606
79 5J8P 1 A ubiquitin 9606
80 5J8P 2 B D-ubiquitin 9606
81 1NDD 1 A, B, C, D PROTEIN (UBIQUITIN-LIKE PROTEIN NEDD8) HUMAN NEDD8 UBIQUITIN-LIKE PROTEIN MONOMER WITH 4 MOLECULES IN THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT 9606
82 4K7U 1 A, B, C ubiquitin UNP residues 1-76 9606 6.3.2.19 | Details
83 6EI1 2 B Polyubiquitin-B 9606
84 6FGE 2 C Polyubiquitin-B 9606
85 2J7Q 2 B, D UBIQUITIN THE C-TERMINAL GLY 76 IS REPLACED BY THE VINYLMETHYLESTER MOIETY UBIQUITIN FUSED TO VINYLMETHYLESTER, UBVME, RESIDUES 1-75 9606
86 3NS8 1 A, B Ubiquitin 9606
87 5GOJ 1 A Ubiquitin 9606
88 5GOJ 2 B D-ubiquitin 9606
89 6OI4 2 C, D ubiquitin 9606
90 1UBI 1 A UBIQUITIN 9606
91 2D3G 1 A, B ubiquitin 9913
92 5GOC 1 A Ubiquitin 9606
93 5GOC 2 D D-ubiquitin 9606
94 5X3N 1 A Polyubiquitin-B UNP residues 1-76 9606
95 5XIU 2 B Ubiquitin-40S ribosomal protein S27a 10090
96 5TXK 2 B Polyubiquitin-B 9606
97 5WFI 2 C, D Ubiquitin 9606
98 6W9R 1 M, N, O, P, Q, R, S, T, U, V, W, X Ubiquitin 9606
99 1UBQ 1 A UBIQUITIN 9606
100 6B7O 2 B, C Polyubiquitin-C 9606
101 4ZFR 2 B ubiquitin unp residues 77-152 9606
102 4MSM 2 B, D Ubiquitin UNP residues 77-152 9606
103 4HJK 1 A Ubiquitin UNP residues 87-162 9606
104 6GLC 2 B Polyubiquitin-B 9606
105 3N32 1 A Ubiquitin 9606
106 5L8H 2 B Polyubiquitin-B Recombinant expression followed by chemical synthesis. 9606
107 3ONS 1 A Ubiquitin 9606
108 5XU8 2 B Ubiquitin-40S ribosomal protein S27a UNP residues 1-76 9913
109 3MHS 4 D Ubiquitin 9606
110 5M93 1 A, B, C Polyubiquitin-B 9606
111 4K7W 1 A, B, C ubiquitin UNP residues 1-76 9606 6.3.2.19 | Details
112 2HD5 2 B Polyubiquitin residues 1-76 9913
113 5NMC 1 A, B, C Polyubiquitin-C 9606
114 5GOI 1 A, B Ubiquitin 9606
115 5GOI 2 C, D D-ubiquitin 9606
116 1WRD 2 B Ubiquitin 9913
117 5GVI 2 B ubiquitin 10090
118 5GVI 3 C ubiquitin 10090
119 4K7S 1 A, B, C ubiquitin UNP residues 1-73 9606 6.3.2.19 | Details
120 2BKR 2 B NEDDYLIN 9606
121 3B1L 1 X E3 ubiquitin-protein ligase parkin Ubiquitin-like domain 10090 2.3.2.31 | Details
122 5CVM 2 B Polyubiquitin-B UNP residues 1-76 9606
123 2FCS 1 A, B Ubiquitin residues 1-76
124 4Q5E 2 B Polyubiquitin 4932 6.3.2.19 | Details
125 5V1Z 2 C, D Ubiquitin 9606
126 3ALB 1 A, B, C, D ubiquitin 9606
127 6GZS 2 B Polyubiquitin-B 9606
128 5D0M 3 B Polyubiquitin-B UNP residues 1-76 9606
129 5XIS 2 B, E Ubiquitin-40S ribosomal protein S27a 10090
130 5XIS 3 C, F Ubiquitin-40S ribosomal protein S27a 10090
131 4PIG 1 A, B, C, D Ubiquitin 9606
132 5X3M 1 A Polyubiquitin-B 9606
133 5X3M 2 D D-ubiquitin D-Ub-S65E-NH2 9606
134 5NL5 1 A, B, C Polyubiquitin-B 9606
135 6SQS 3 C, F Ubiquitin-40S ribosomal protein S27a Contains a GSGGS at the N-terminus resulted from cloning. G76 in Chains C and F form a covalent bond with K85 sidechain in Chains B and E, respectively. 9606
136 6ML1 2 C, E Ubiquitin variant 15.1a This is a Ubv (ubiquitin variant) selected by phage display to bindthe USP15 USP domain with high affinity 9606
137 4MSQ 2 B, D Ubiquitin UNP residues 77-152 9606
138 4LDT 2 B Ubiquitin aldehyde 9606
139 4LDT 4 D Ubiquitin 9606
140 3VUW 1 A, B, C Polyubiquitin-C Ubiquitin 9606
141 3TMP 2 B, D, F, H Polyubiquitin-C Ubiquitin-like 1 9606
142 2QHO 1 A, C, E, G Ubiquitin 9913
143 3H7P 1 A Ubiquitin 9606
144 3H7P 2 B Ubiquitin 9606
145 4WZP 1 A, B, C, D, E, F, G, H ubiquitin phosphorylation at Ser65 UNP residues 1-76 9606
146 3EHV 1 A, B, C Ubiquitin 9606 6.3.2.19 | Details
147 5GO7 1 A Ubiquitin 9606
148 5GO7 2 B D-ubiquitin 9606
149 6CPM 2 E, F Ubiquitin variant 15.1d This is a Ubv (ubiquitin variant) selected by phage display to bind the USP15 USP domain with high affinity 9606
150 1P3Q 2 U, V Ubiquitin 9913
151 2OOB 2 B Ubiquitin 9913
152 5ULF 2 B, D Ubiquitin 9606
153 5KYE 2 C, D Polyubiquitin-B UNP residues 1-76 9606
154 6ISU 2 B Ubiquitin 9606
155 6ISU 3 C Ubiquitin 9606
156 4F8C 2 B, D NEDD8 9606
157 6ULH 3 E Ubiquitin 9606
158 5ULH 2 B Ubiquitin 9606
159 3HM3 1 A, B, C, D Ubiquitin 9606
160 5LRW 2 B, D Polyubiquitin-B Gly76 was replaced with 2-bromoethylamine 9606
161 5GOK 1 A Ubiquitin 9606
162 5GOK 2 B D-ubiquitin 9606
163 4WLR 3 C Polyubiquitin-B 9606
164 3WWQ 1 A, D, G, J Ubiquitin 10090
165 3WWQ 2 B, E, H, K Ubiquitin 10090
166 6K9P 2 G Ubiquitin 9606
167 5JG6 2 B, C Polyubiquitin-B 9606
168 3EFU 1 A Ubiquitin 9606
169 4Q5H 2 B Polyubiquitin 4932 6.3.2.19 | Details
170 5AF4 1 A, B, C, D, E, F, G, H UBIQUITIN ISOPEPTIDE LINKAGES BETWEEN A76 C AND B33 NZ, C76 C AND D33 NZ, E76 C AND F33 NZ 9606
171 4V3K 2 B, E POLYUBIQUITIN-C LYS85 IN CHAINS A AND D IS COVALENTLY LINKED TO GLY76 IN CHAINS B AND E, RESPECTIVELY. RESIDUES 77-152 9606
172 6OAR 2 B, D, F, H Interferon stimulated gene 17 9940
173 4IG7 2 B Ubiquitin 9606
174 2JF5 1 A, B UBIQUITIN ISO-PEPTIDE LINK BETWEEN A-LYS63 AND B-GLY76 9606
175 5MN9 1 A, B Ubiquitin-40S ribosomal protein S27a 9913
176 5WVO 1 A, B Ubiquitin 9606
177 3V6E 2 B Ubiquitin 9606
178 1UZX 2 B UBIQUITIN 9913
179 5YDR 1 A, D Polyubiquitin-B UNP residues 1-73 9606
180 1S1Q 2 B, D ubiquitin 9606
181 6NYA 2 B, E Ubiquitin residues 77-152 4565
182 6SQR 3 C, F, L Ubiquitin-40S ribosomal protein S27a Contains a GSGGS at the N-terminus resulted from cloning. G76 in Chains C, F, L form a covalent bond with K85 sidechain in Chains B, E, K, respectively. 9606
183 6SQR 6 I Polyubiquitin-C Contains a GSGGS at the N-terminus resulted from cloning. G76 in Chain I form a covalent bond with K85 sidechain in Chain H. 9606
184 6QML 2 B, E Polyubiquitin-B Met 1 substituted with Norleucine (NLE) 9606
185 6QML 3 C, F Polyubiquitin-C 9606
186 4LJP 2 B Polyubiquitin-C unp residues 77-152 9913
187 3VUY 1 A, B, C Polyubiquitin-C Ubiquitin 9606
188 3PHW 2 B, D, F, H Ubiquitin-40S ribosomal protein S27a UNP residues 1-75 9606
189 4PQT 2 B Protein UBBP4 unp residues 77-152 9606
190 5BZ0 2 B Ubiquitin-40S ribosomal protein S27a Ubiquitin from bovine erythrocytes 9913
191 2GBR 1 A, B, C Ubiquitin 9606
192 2FAZ 1 A, B Ubiquitin-like containing PHD and RING finger domains protein 1 UBIQUITIN-LIKE DOMAIN 9606 2.3.2.27 | Details
193 4XKL 1 A, C Ubiquitin 9606
194 4FJV 2 B, D Polyubiquitin-C 9606
195 6P5B 3 E Ubiquitin 9606
196 5DFL 1 B Ubiquitin 9606
197 2C7N 2 B, D, F, H, J, L UBIQUITIN 9913
198 6UPU 2 B, C, D, F, G, H, J, K, L, N, O, P Ubiquitin 9606
199 5HPS 2 B Ubiquitin variant P1.1 9606
200 5GOH 1 A Ubiquitin 9606
201 5GOH 2 D D-ubiquitin 9606
202 3ZNI 4 D, H, L, P POLYUBIQUITIN-C CARBONYL CARBON OF G76 IN CHIANS D, H, L AND P FORMS AN ISOPEPTIDE LINKAGE WITH THE SIDECHAIN OF K85 IN CHAINS C, G, K AND O, RESPECTIVELY. GSGGS LINKER AT THE N- TERMINUS OF PROTEIN RESULTED FROM CLONING RESIDUES 77-152 9606
203 2G45 2 B, E Ubiquitin 9606
204 6AQR 4 D Polyubiquitin-C 9606
205 5MNJ 2 B, F Polyubiquitin-B gsggs linker at the N-terminus resulted from cloning. G76 in chain B is covalently linked to K85 side chain in Chain A. 9606
206 5ZQ3 2 C, D Ubiquitin 9606
207 5ZQ4 2 C, D ubiquitin 9606
208 4GSW 1 A, B Ubiquitin 5759
209 4RF1 2 B Ubiquitin-60S ribosomal protein L40 UNP residues 1-75 9606
210 1SIF 1 A ubiquitin 9606
211 5JBY 1 A, C, E ubiquitin 9606
212 5JBY 2 B, D, F D-ubiquitin 9606
213 5IFR 2 B Polyubiquitin-B 9606
214 2IBI 2 B Ubiquitin 9606
215 5L6H 2 B, D, E Ubiquitin-40S ribosomal protein S31 4932
216 6W9S 2 B Ubiquitin 9606
217 6D4P 2 C Ubiquitin Variant Ubv.D1.1 9606
218 6JB7 1 B Ubiquitin 9606
219 5GOG 1 A Ubiquitin 9606
220 5GOG 2 B D-ubiquitin 9606
221 2GBK 1 A, B, C, D Ubiquitin 9606
222 4AUQ 3 C, F POLYUBIQUITIN-C UBIQUITIN, RESIDUES 1-76 9606
223 4NNJ 2 B, D, E Uba1 UNP residues 1-76 4932
224 4Z9S 1 A, B, C, D Ubiquitin-40S ribosomal protein S27a UNP RESIDUES 1-76 9913
225 6DGF 2 B Polyubiquitin-B 9606
226 2XEW 1 A, B, C, D, E, F, G, H, I, J, K, L UBIQUITIN UBIQUITIN POLYMER LINKED THROUGH LYS11 IN AN ISOPEPTIDE LINKAGE 9606
227 2WDT 2 B, D UBIQUITIN C-TERMINAL GLY76 OF WILDTYPE UBIQUITIN IS REPLACED BY A VINYL METHYLESTER MOIETY (UBVME) RESIDUES 1-75 9606
228 1XT9 2 B Neddylin 9606
229 1AAR 1 A, B DI-UBIQUITIN 9913
230 4AP4 3 C, F UBIQUITIN C ISOPEPTIDE AMIDE LINKED TO UBCH5A (CHAIN B AND CHAIN E) RESIDUES 76-152 9606
231 4UEL 2 B POLYUBIQUITIN-B GLY76 OF UBIQUITIN IS REPLACED BY GLY-AYE THAT IS COVALENTLY LINKED TO THE ACTIVE SITE CYS88 OF UCH-L5 9606
232 4II2 2 B Ubiquitin-60S ribosomal protein L40 UNP residues 1-76 4896
233 6OQ1 1 A, B Ubiquitin 9606
234 6OQ1 2 C, D Ubiquitin 9606
235 6OQ1 3 E, F Ubiquitin 9606
236 6RYA 2 B, D, F Polyubiquitin-C 9606
237 4ZFT 2 B, D Polyubiquitin-B unp residues 77-152 9606
238 2WX0 1 A, B, E, F UBIQUITIN 9913
239 3A1Q 1 A, D Ubiquitin 10090
240 3A1Q 2 B, E Ubiquitin 10090
241 5HPL 2 C, D Ubiquitin variant R5.4 9606
242 5TR4 2 B, D Ubiquitin 9913
243 4BOS 2 C, E POLYUBIQUITIN-C RESIDUES 1-76 9606
244 3H7S 1 A, B Ubiquitin 9606
245 3C0R 2 B, D Ubiquitin 9606
246 5AIU 3 C, F POLYUBIQUITIN-C CHAIN B COVALENTLY LINKED TO CHAINS C, CHAIN E IS COVALENTLY LINKED TO CHAIN F UNP RESIDUES 1-76 9606
247 6PGV 2 B Polyubiquitin-B 9606
248 4S22 1 A, B, C, D Ubiquitin residues 77-152 9913
249 2C7M 2 B UBIQUITIN 9913
250 1TBE 1 A, B TETRAUBIQUITIN 9606
251 6NXK 1 A, B Polyubiquitin-C 9606
252 3PT2 2 B Ubiquitin B 9606
253 5VZW 2 C, D Ubiquitin 9606
254 5JZE 1 B, D Ubiquitin-like protein ISG15 C-terminal 10090
255 3PRM 2 B, D Ubiquitin 9606 3.4.19.12 | Details
256 6KG6 2 C Ubiquitin-40S ribosomal protein S27a 9606
257 4R62 2 B Ubiquitin-40S ribosomal protein S27a Ubiquitin 9606
258 5EYA 3 C, D Polyubiquitin-B UNP residues 1-76 9606
259 5GO8 1 A ubiquitin 9606
260 5GO8 2 B D-ubiquitin 9606
261 3A33 2 B Ubiquitin 9606
262 3VHT 3 C Ubiquitin 10090
263 5XIT 1 D, F Ubiquitin-40S ribosomal protein S27a 10090
264 5XIT 3 B, H Ubiquitin-40S ribosomal protein S27a 10090
265 6ASR 1 A, C Ubiquitin residues 1-76 9606
266 2FCN 1 A, B Ubiquitin residues 1-76
267 4DHJ 2 B, F, J, M Ubiquitin aldehyde 9606
268 4DHJ 3 D, H Ubiquitin 9606
269 3ZNH 2 B POLYUBIQUITIN-B GLY76 IS REPLACED WITH A PROPARGYL GROUP 9606
270 4BBN 2 C POLYUBIQUITIN-B RESIDUES 1-76 9913
271 4BBN 3 F POLYUBIQUITIN-B RESIDUES 229-304 9913
272 4NQL 2 B Ubiquitin 10090
273 4NQL 3 C Ubiquitin 10090
274 6NJG 2 C Polyubiquitin-B 9606
275 1NBF 2 C, D Ubiquitin aldehyde 9606
276 2O6V 1 A, C, E, G Ubiquitin 9606
277 2O6V 2 B, F Ubiquitin 9606
278 2O6V 3 D, H Ubiquitin 9606
279 3OFI 2 C, D Ubiquitin 9606
280 5TL7 1 A, C Ubiquitin-like protein ISG15 C-terminal domain (UNP residues 78-155 10090
281 6UMS 3 E Ubiquitin 9606
282 3AUL 1 A, B Polyubiquitin-C Ubiquitin 9606
283 3UGB 2 B Polyubiquitin-C unp residues 1-76 9606
284 5JBV 1 A Ubiquitin 9606
285 5JBV 2 B D-ubiquitin 9606
286 5X3O 1 A Polyubiquitin-B UNP residues 1-76 9606
287 5X3O 2 D D-ubiquitin 9606
288 5ULK 2 B Ubiquitin 9606
289 5ZQ5 2 B, D Ubiquitin 9606
290 6FX4 2 B, D Polyubiquitin-B 9606
291 3NOB 1 A, B, C, D, E, F, G, H Ubiquitin 9606
292 6CRN 2 E, F, G, H Ubiquitin variant 15.2 This is a Ubv (ubiquitin variant) selected by phage display to bind the USP15 USP domain with high affinity 9606
293 6D68 2 C, D Ubv.G1.1 9606
294 6QK9 1 A, B, C, D, E, F, G, H, I, J, K, L Polyubiquitin-B 9606
295 3IFW 2 B Ubiquitin 9606
296 3N3K 2 B Ubiquitin 9606
297 6A6I 2 B, D Polyubiquitin-B UNP residues 1-76 9606
298 6A6I 3 F, H Polyubiquitin-B UNP residues 1-77 9606
299 5W8U 2 B, D Ubiquitin-like protein ISG15 UNP residues 80-156 9606
300 2FCM 1 A, B Ubiquitin residues 1-76
301 6JWI 1 G, I Ubiqutin 10090
302 4KSK 2 C, D Polyubiquitin-C unp residues 76-152 9606
303 5L6J 2 B, D Ubiquitin-40S ribosomal protein S31 4932
304 5HPK 2 B Ubiquitin variant NL.1 9606
305 5OHL 2 I, J, K, L, M, N, O, P Polyubiquitin-B 9606
306 3I3T 2 B, D, F, H Ubiquitin 9606
307 5FER 3 C, F Ubiquitin-40S ribosomal protein S27a 9913
308 5IBK 3 C, F Polyubiquitin-B UNP residues 75-150 9606
309 5OHK 2 B Polyubiquitin-B 9606
310 1CMX 2 B, D PROTEIN (UBIQUITIN YUH1-UBAL) UBIQUITIN C-TERMINUS MODIFIED TO AN ALDEHYDE ALL 9606 3.1.2.15 | Details
311 6JKY 3 C, F Ub 48269
312 3OJ3 1 A, B, C, D, E, F, G, H Ubiquitin Ubiquitin, UNP residues 1-76 9606
313 5N38 2 B Polyubiquitin-B Ser65 is phosphorylated 9606
314 4HCP 2 B NEDD8 unp residues 1-76 9606
315 3O65 2 B, D, F, H Ubiquitin 9606
316 5CRA 2 C, D Polyubiquitin-B UNP residues 1-75 9606
317 6IF1 2 C, D Ubiquitin 9606
318 5TL6 2 A, C Ubiquitin-like protein ISG15 C-terminal domain (UNP residues 80-157) 9606
319 5U4P 3 C Ubiquitin-40S ribosomal protein S31 4932
320 5L6I 2 B, D, E Ubiquitin-40S ribosomal protein S31 4932
321 6O82 2 B, D Ubiquitin-60S ribosomal protein L40 residues 1-76 4896
322 5XPK 1 A Ubiquitin 9606
323 5XPK 2 B D-ubiquitin 9606
324 5XDP 1 B D-ubiquitin 9606
325 5XDP 2 A ubiquitin-B K11/48-branched teraubiquitin 9606
326 5O76 3 E, F UbV.pCBL ubiquitin variant 9606
327 5D0K 3 B, E, H, K Polyubiquitin-B UNP residues 1-76 9606
328 5OHV 1 A, C Ubiquitin 9606
329 5KNL 2 B, E Ubiquitin 84753
330 4I6L 2 B Ubiquitin UNP residues 77-150 9606
331 5TUT 2 B Ubiquitin 9606
332 3OLM 2 D Ubiquitin 4932
333 3CMM 2 B, D Ubiquitin 559292
334 4MDK 2 E, F, G, H Ubiquitin UNP residues 76-152 9606
335 5W8T 1 B, D Ubiquitin-like protein ISG15 9606
336 5N2W 2 B Polyubiquitin-B Ser65 is phosphorylated to give SEP65 9606
337 7BXG 3 D Polyubiquitin-C 9606
338 4MM3 1 A Ubiquitin UNP residues 1-76 9606
339 2FIF 1 A, C, E Ubiquitin 9913
340 5JQS 2 D Ubiquitin-40S ribosomal protein S27a 9913
341 5YDK 2 B, E, H, K Ubiquitin-40S ribosomal protein S27a UNP residues 1-76 9606
342 5YDK 3 C, D, I, J Ubiquitin-40S ribosomal protein S27a UNP residues 1-76 9606
343 2XBB 2 C, D UBIQUITIN 9913
344 2GMI 3 C Ubiquitin 9606
345 4HCN 2 B Polyubiquitin unp RESIDUES 1-76 4932
346 5J26 1 B Ubiquitin Variant i53 9606
347 6KL4 3 C Ub 9606
348 3DVG 3 X Ubiquitin D77 9606
349 3DVG 4 Y Ubiquitin 9606
350 1WR6 2 E, F, G, H ubiquitin 9913
351 3LDZ 1 E, F, G Ubiquitin 9913
352 3PTF 2 C, D Polyubiquitin-B Ubiquitin 9606
353 6BVA 3 A, B Polyubiquitin-B 9606
354 5ZQ7 2 B, D Ubiquitin 9606
355 6XAA 2 B Ubiquitin-propargylamide 9606
356 3RUL 1 A, B, C, D Ubiquitin 9606
357 5BNB 2 E, F, G, I Polyubiquitin-B 9606
358 6K2U 1 B Polyubiquitin-C 9606
359 5LRX 2 B, D Polyubiquitin-B Gly76 was replaced with propargylamide 9606
360 5CAW 2 B, D Polyubiquitin-B phosphorylated at Ser65 Gly76 exchanged with chemical probe, bromopropylamine. The bromide was lost during the coupling. 9606
361 4XOK 1 A, B, C Ubiquitin 9606
362 3MTN 2 B, D UBIQUITIN VARIANT UBV.21.4 9606
363 5ZQ6 2 B, D Ubiquitin 9606
364 5LRV 2 B Polyubiquitin-B Lys11 was replaced with a diaminobutyric acid (DAB) residue 9606
365 5LRV 3 C Polyubiquitin-B Gly76 was replaced with a ligation handle for diubiquitin probe generation 9606
366 6S53 2 D, F, J, L Polyubiquitin-C 9606
367 3DVN 3 U, X Ubiquitin D77 9606
368 3DVN 4 V, Y Ubiquitin 9606
369 5L8W 3 C Polyubiquitin-B Recombinant expression followed by chemical synthesis 9606
370 6KFP 3 D Ubiquitin-40S ribosomal protein S27a 9606
371 1F9J 1 A, B TETRAUBIQUITIN 9606
372 6BYH 3 C, D, H Polyubiquitin-B 9606
373 6XA9 2 B, D, F ISG15 CTD-propargylamide C-terminal domain (UNP residues 79-157) 9606
374 6NXL 1 A, B, C, D, E, F, G, H Polyubiquitin-B 9606
375 2FID 1 A Ubiquitin 9913
376 5OHP 2 B, C Polyubiquitin-B 9606
377 4HXD 1 A, C Polyubiquitin-C 9606 3.4.19.12 | Details
378 1YD8 1 U, V UBIQUIN 9913
379 4BOZ 2 B, C, E UBIQUITIN-C 9606
380 5HPT 2 B, E, H Ubiquitin variant P2.3 9606
381 3WXG 2 B, E Ubiquitin 10090
382 3WXG 3 C, F Ubiquitin UNP residues 1-72 10090
383 6CP2 3 C Polyubiquitin-B 9606
384 4XKH 1 A, B, D, F, G, I Polyubiquitin-C UNP RESIDUES 77-152 9913
385 3IHP 2 C, D Ubiquitin 9606
386 6D6I 3 C, F Ubv.V1.1 9606
387 5LN1 2 U Polyubiquitin-B 9606
388 3K9P 2 B Ubiquitin 9606
389 3DBH 3 I, J, K, L NEDD8 9606
390 4BVU 3 C UBIQUITIN OXYESTER LINK BETWEEN G76 AND UBCH5C S85 9606
391 6JB6 1 B Ubiquitin 9606
392 5CVN 3 D Polyubiquitin-B UNP residues 1-76 9606
393 3JSV 1 A Ubiquitin 9606
394 3JSV 2 B Ubiquitin 9606
395 3DBL 3 I, J, K, L NEDD8 9606
396 3TBL 2 D, E Ubiquitin 9606
397 2HTH 1 A Ubiquitin 9606
398 3KW5 2 B Ubiquitin 9606
399 6EQI 1 A Ubiquitin 9606
400 5E6J 2 B, E ubiquitin 32630
401 5E6J 3 C, F Polyubiquitin-B 32630
402 2NVU 4 I, J NEDD8 9606
403 2XK5 1 A UBIQUITIN 9606
404 2XK5 2 B UBIQUITIN 9606
405 6OAM 2 C, D Ubiquitin 9606
406 4JQW 2 C Polyubiquitin-C Ubiquitin 9606
407 4RF0 2 B Ubiquitin-60S ribosomal protein L40 UNP residues 1-75 9606
408 3KVF 2 B Ubiquitin 9606
409 6FYH 2 B Polyubiquitin-B 9606
410 6O83 2 B, D Ubiquitin-60S ribosomal protein L40 residues 1-75 4896
411 5AF6 1 A, B, C, D, E UBIQUITIN ISOPEPTIDE BONDS ACROSS BETWEEN CHAINS, A76 C AND D33 NZ, B76 C AND A33 NZ, C76C AND B33 NZ, E76 C AND C33 NZ. ISOPEPTIDE BOND ACROSS THE ASU FOR, D76 C AND E33 NZ SYMM 9606
412 3H1U 1 A, B Ubiquitin 9913
413 6HEK 2 B, D Polyubiquitin-B 9606
414 5JTJ 2 B Polyubiquitin-B 9606
415 2WX1 1 A, B UBIQUITIN 9913
416 6UMP 1 E Ubiquitin 9606
417 4WUR 2 B Polyubiquitin-B UNP residues 1-76 9606
418 4II3 2 B, D Ubiquitin-60S ribosomal protein L40 UNP residues 1-76 4896
419 5C7J 2 C, D Polyubiquitin-C UNP residues 1-74 9606
420 4S1Z 1 A, B, C, D, E Ubiquitin residues 1-76 9606
421 6DC6 2 B, D Ubiquitin 9606
422 4XOL 1 A, B Ubiquitin 9606
423 5JP3 2 B, D, F, H Polyubiquitin-B 9606
424 4P4H 3 S, T, U, W, X Ubiquitin-60S ribosomal protein L40 9606
425 3GZN 3 I, J NEDD8 9606
426 5O44 1 A, E Ubiquitin 7370
427 5O44 2 B, C Polyubiquitin-B 9606
428 5O44 3 D, F Polyubiquitin-B 9606
429 3PHD 2 E, F, G, H Polyubiquitin 9606
430 3DBR 3 I, J, K, L NEDD8 9606
431 5YIK 2 C, D, F ubiquitin UNP RESIDUES 1-76 9606
432 5ZBU 3 E Ubiquitin 9606
433 3N30 1 A, B Ubiquitin 9606
434 4P5O 5 H, K NEDD8 9606
435 3ZLZ 1 A, B UBIQUITIN TRI-UBIQUITIN CHAIN LINKED VIA LYS6. K48R IN BOTH MOLECULES. ISOPEPTIDE LINKAGES ARE NOT RESOLVED. 9606
436 6W9D 3 C, F, I Ubiquitin Linked to Ube2d2 via isopeptide bond between G76 of ubiquitin and Lys85 of Ube2d2 9606
437 3JVZ 3 X, Y Ubiquitin 9606
438 4DHZ 2 B Ubiquitin aldehyde 9606
439 4DHZ 3 E Ubiquitin 9606
440 5YIJ 2 C, D, G Ubiquitin UNP RESIDUES 1-76 9606
441 3DQV 1 A, B NEDD8 NEDD8 C-terminus covalently linked to Cul5 Lys724 9606
442 5UDH 3 E Ubiquitin C variant Hexa-his N-terminal tagged protein UNP residues 17-92 9606
443 5AIT 3 C, F POLYUBIQUITIN-C UNP RESIDUES 1-76 9913
444 5O6S 1 A, B, C, D, E, F Polyubiquitin-B Variant of ubiquitin identified from phage-display 9606
445 3VFK 1 A ubiquitin, C-terminal fused by Cys-Lys-D-Ala-D-Ala 9606
446 5C7M 2 B, C Polyubiquitin-C UNP residues 1-75 9606
447 1R4M 3 I, J, K, L Ubiquitin-like protein NEDD8 9606
448 3JW0 3 X, Y Ubiquitin 9606
449 4LCD 3 E, F Ubiquitin UNP residues 1-75 9606
450 6DJ9 2 G, H, I, J, K, L Ubiquitin Variant UbV 15.D The following is a variant of ubiquitin selected by phage display to bind to the USP15 N-terminus 9606
451 4DDG 2 D, E, F, G, H, I, M, N, O, P, Q, R Polyubiquitin-C 9606
452 5JTV 2 B, D, F, H Polyubiquitin-B 9606
453 5OHN 2 B, D Polyubiquitin-B 9606
454 5TTE 3 F ubiquitin unp residues 1-76 4565
455 2FCQ 1 A, B Ubiquitin residues 1-76 9031
456 3EEC 1 A, B Ubiquitin 9606
457 5VNZ 3 C, F Ubiquitin 9606
458 6H4H 2 C, D Polyubiquitin-B 9606
459 4NQK 2 E, F, G, H, I, J Ubiquitin UNP residues 76-152 9606
460 6C16 3 D, H Polyubiquitin-B 9606
461 4DDI 2 D, E, F, G, H, I Polyubiquitin-C 9606
462 5H7S 1 E, F Ubiquitin-like 1 9606
463 5EDV 3 E, F, G, H Polyubiquitin-B UNP residues 1-76 9606
464 5CVO 3 C, F Polyubiquitin-B UNP residues 1-76 9606
465 4UF6 2 B, E, H, K POLYUBIQUITIN-B GLY76 OF UBIQUITIN IS REPLACED BY GLY-AYE THAT IS COVALENTLY LINKED TO THE ACTIVE SITE CYS88 OF UCH- L5 9606
466 5OHM 1 A, C, E, G, I, K Polyubiquitin-C 9606
467 4ZUX 10 X, c, h, m Polyubiquitin-B 9606
468 2DX5 2 B Ubiquitin 9913
469 3OJ4 2 B, E Ubiquitin Ubiquitin, UNP residues 1-76 9606
470 1R4N 3 I, J, K, L Ubiquitin-like protein NEDD8 9606
471 5VO0 3 C, F Ubiquitin 9606
472 6DJW 2 B Ubiquitin 9913
473 2AYO 2 B Ubiquitin 9606
474 5KHY 1 A Polyubiquitin-B 9606
475 5KHY 2 B Polyubiquitin-B 9606
476 6DJX 2 B Ubiquitin 9913
477 4JIO 2 U Ubiquitin 9606
478 4WHV 3 A, F, G, L Polyubiquitin-B unp residues 1-76 9606
479 6VEN 7 K Ubiquitin 9606
480 6TTU 4 N NEDD8 Residue 1, Ser, comes from the linker. NEDD8 residue starts from MET. 9606
481 6TTU 7 U Polyubiquitin-C 9606
482 6VAE 3 C, D Ubiquitin isopeptide bond between C-terminus of ubiquitin (chain C) and Lys523 Nz of FANCI (chain A); isopeptide bond between C-terminus of ubiquitin (chain D) and Lys561 Nz of FANCD2 (chain B) 9606
483 6VAF 3 D Ubiquitin 9606
484 6TNF 3 C Polyubiquitin-C 9606
485 6V5D 1 A Ubiquitin 9606
486 6UYI 1 C Ubiquitin 9606
487 6UYI 2 D Ubiquitin 9606
488 6UYJ 1 C Ubiquitin 9606
489 6UYJ 2 D Ubiquitin 9606
490 6TBM 15 R Polyubiquitin-B 9606
491 6T9L 12 O Polyubiquitin-C 9606
492 6UH5 11 Q Ubiquitin 9606
493 6KOW 1 A Polyubiquitin-B 9606
494 6KOX 1 A Polyubiquitin-B 9606
495 6KNA 1 A Viral ubiquitin 307456
496 6KIU 11 O Ubiquitin 9606
497 6KIV 9 O Ubiquitin 9606
498 6KIW 9 O Ubiquitin 9606
499 6K4I 1 A ubiquitin 9606
500 6OQ2 1 B Ubiquitin 9606
501 6OQ2 2 D Ubiquitin 9606
502 6OQ2 3 E Ubiquitin 9606
503 6R7F 14 N NEDD8 9606
504 6R7I 9 N NEDD8 9606
505 6OB1 1 A Ubiquitin 9606
506 6OB1 2 B Ubiquitin 9606
507 6OA9 2 H, J, K Ubiquitin 4932
508 6OAA 3 H Ubiquitin 4932
509 6O96 8 L Polyubiquitin-B 9606
510 6JMA 7 Y Ubiquitin 9606
511 6J99 7 L Ubiquitin 9606
512 6NQA 7 L Ubiquitin 9606
513 6NOG 5 L Ubiquitin 9606
514 6NN6 8 L Ubiquitin 9606
515 6QF8 1 A Polyubiquitin-B 9606
516 6NJ9 5 L Ubiquitin 9606
517 6N13 2 D ubiquitin 9606
518 6N13 4 A phosphoubiquitin 9606
519 6MSB 19 u, w Ubiquitin 9606
520 6MSD 19 u, w Ubiquitin 9606
521 6MSE 19 u Ubiquitin 9606
522 6MSG 19 u Ubiquitin 9606
523 6FTX 8 N, O Polyubiquitin-B 9606
524 5ZD0 1 A ubiquitin 9606
525 5YMY 1 A Ubiquitin 9606
526 5YMY 2 B Ubiquitin 9606
527 5VZM 1 A Ubiquitin UNP residues 1-76 9606
528 5XK4 1 A Polyubiquitin-B UNP residues 1-76 9606
529 5XK5 1 A Polyubiquitin-B UNP residues 1-76 9606
530 5VEY 2 B Polyubiquitin-B 9606
531 5VF0 1 A Polyubiquitin-B 9606
532 5XBO 1 A Polyubiquitin-B UNP residues 1-76 9606
533 5N9V 1 A NAD(P)(+)--arginine ADP-ribosyltransferase 5911 2.4.2.31 | Details
534 5UJL 1 A, B Ubiquitin residues 1-76 9606
535 5UJN 1 A, B Ubiquitin 9606
536 5TR5 1 A E3 ubiquitin-protein ligase parkin residues 1-76 9606 2.3.2.31 | Details
537 5GO0 1 A Ubiquitin, putative 5691
538 5GJQ 34 y Polyubiquitin-B UNP RESIDUES 1-76 9606
539 5KGF 8 M, O Ubiquitin 9606
540 2NBD 1 A entity 9606
541 2NBE 1 A entity 9606
542 2N7K 1 A NEDD8 9606
543 5A5B 9 9 UBIQUITIN ALDEHYDE 9606
544 2N3U 2 B, C Ubiquitin-60S ribosomal protein L40 UNP residues 1-76 9606
545 2N3V 2 B, C Ubiquitin-60S ribosomal protein L40 UNP residues 1-76 9606
546 2N3W 2 B, C Ubiquitin-60S ribosomal protein L40 UNP residues 1-76 9606
547 2N2K 1 A ubiquitin 9606
548 2N2K 2 B ubiquitin 9606
549 2N13 2 B Ubiquitin 9606
550 2N13 3 C Ubiquitin 9606
551 2MWS 1 A Ubiquitin UNP residues 1-76 9606
552 2MUR 2 B Ubiquitin 9606
553 2MSG 1 A Ubiquitin UNP residuse 1-72 9606
554 2MRO 1 A Polyubiquitin-B Human Ubiquitin 9606
555 2MRE 1 A Polyubiquitin-C unp residues 1-76 9606
556 2MOR 1 A Ubiquitin UNP residues 1-76 9606
557 2MJB 1 A Ubiquitin-60S ribosomal protein L40 Ubiquitin-like 3 domain 9606
558 2MJ5 1 A Polyubiquitin-C UNP residuses 1-76 9606
559 2MI8 1 A Ubiquitin 9606
560 2RU6 1 A Ubiquitin 9606
561 2MCN 2 B Ubiquitin UNP residues 1-76 9606
562 2MBQ 1 A, B Ubiquitin UNP residues 1-76 9606
563 2MBO 1 A, B Ubiquitin UNP residues 1-76 9606
564 2MBH 2 A Ubiquitin 9606
565 2MBB 2 B Polyubiquitin-B UNP P0CG47 residues 1-76 9606
566 2M0X 1 A engineered ubiquitin variant 9606
567 2LZ6 1 A Ubiquitin 9606
568 2LVO 1 A Ubiquitin 9606
569 2LVP 1 A, B Ubiquitin 9606
570 2LVQ 1 A, B Ubiquitin 9606
571 2RSU 1 A Ubiquitin 9606
572 2LRW 1 A Ubiquitin, putative 185431
573 2LJ5 1 A Ubiquitin 9606
574 2LD9 1 A Ubiquitin 9606
575 2L3Z 1 A Ubiquitin UNP Residues 1-76 9606
576 2L0T 1 A Ubiquitin 9606
577 2L0F 1 A Ubiquitin 9606
578 2L00 2 B Ubiquitin ubiquitin core domain 4932
579 2RR9 1 A, B ubiquitin 9606
580 2KWV 2 B Ubiquitin 9606
581 2KWU 2 B Ubiquitin 9606
582 2KTF 1 A Ubiquitin 9606
583 2KOX 1 A Ubiquitin 9606
584 2KO3 1 A NEDD8 9606
585 2KNB 1 A E3 ubiquitin-protein ligase parkin 10116 2.3.2.31 | Details
586 2KN5 1 A Ubiquitin 9606
587 2KLG 1 A Ubiquitin 9606
588 2KJH 2 B Ubiquitin 9606
589 2KHW 2 B Ubiquitin 9606
590 2KDE 2 B, C Ubiquitin 8355
591 2KDF 2 B, C Ubiquitin 9606
592 2K8B 1 A Ubiquitin 9606
593 2K8C 1 A Ubiquitin 9606
594 2K6D 2 B Ubiquitin ubiquitin 9606
595 2K39 1 A Ubiquitin 8355
596 2JZZ 1 A Ubiquitin 9606
597 2JY6 1 A Ubiquitin protein 9606
598 2JWZ 1 A Ubiquitin 4932
599 2JVC 1 A ubiquitin_like protein
600 2JT4 2 B Ubiquitin SH3 domain sequence database residues 350-420 4932
601 2Z59 2 B Ubiquitin 9606
602 2JRI 2 B, C UBC protein sequence database residues 318-469 9606
603 2PE9 1 A, B Ubiquitin 9606
604 2PEA 1 A, B Ubiquitin 9606
605 2NR2 1 A Ubiquitin 9606
606 2DZI 1 A Ubiquitin-like protein 4A ubiquitin-like domain 9606
607 2HJ8 1 A Interferon-induced 17 kDa protein ISG15 C-terminal domain (8.9 kDa), Ubiquitin-like 2 9606
608 2G3Q 2 B Ubiquitin 4932
609 2DEN 2 B Polyubiquitin-B 9606
610 2FUH 2 B Ubiquitin Ubiquitin 10116
611 1ZW7 1 A Ubiquitin 4932
612 1ZGU 2 B Ubiquitin 9606
613 1WY8 1 A Np95-like ring finger protein, isoform a ubiquitin-like domain 9606 2.3.2.27 | Details
614 2BGF 1 A, B DI-UBIQUITIN ISOPEPTIDE BOND BETWEEN GLY76A AND LYS48B 9606
615 1XQQ 1 A ubiquitin 9606
616 1WR1 1 A Ubiquitin 4932
617 1WH3 1 A 59 kDa 2'-5'-oligoadenylate synthetase like protein ubiquitin like domain 9606
618 1V80 1 A Ubiquitin/60s ribosomal protein L40 fusion 9913
619 1V81 1 A Ubiquitin/60s ribosomal protein L40 fusion 9913
620 1Q5W 2 B Ubiquitin 9606
621 1Q0W 2 B Ubiquitin 4932
622 1P9D 2 U UV excision repair protein RAD23 homolog A ubiquitin-like domain 9606
623 1P98 1 A UV excision repair protein RAD23 homolog A Ubiquitin-like domain 9606
624 1P1A 1 A UV excision repair protein RAD23 homolog B Ubiquitin-like domain 9606
625 1OTR 2 B Ubiquitin 4932
626 1MG8 1 A Parkin ubiquitin-like domain 10090 2.3.2.31 | Details
627 1IYF 1 A parkin ubiquitin-like domain 9606 2.3.2.31 | Details
628 1G6J 1 A UBIQUITIN 9606
629 1FXT 2 B UBIQUITIN 9606
630 1D3Z 1 A PROTEIN (UBIQUITIN) 9606
631 1C3T 1 A PROTEIN (1D8 UBIQUITIN) 9606
632 1UD7 1 A PROTEIN (UBIQUITIN CORE MUTANT 1D7) 9606
633 1BT0 1 A PROTEIN (UBIQUITIN-LIKE PROTEIN 7, RUB1) 3702