2JZW

How the HIV-1 nucleocapsid protein binds and destabilises the (-)primer binding site during reverse transcription


Sequence Similarity Clusters for the Entities in PDB 2JZW

Entity #1 | Chains: A
HIV-1 nucleocapsid protein NCp7(12-55) protein, length: 44 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 20767
95 % 2 7 13722
90 % 2 7 13543
70 % 2 7 12435
50 % 2 7 11365
40 % 2 7 10681
30 % 2 7 10128
Entity #2 | Chains: B
DNA (5'-D(*DGP*DTP*DCP*DCP*DCP*DTP*DGP*DTP*DTP*DCP*DGP*DGP*DGP*DC)-3') dna, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

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