Sequence Similarity Clusters for the Entities in PDB 2J8U

Entity #1 | Chains: A,H
HLA class I histocompatibility antigen, A-2 alpha chain protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 26532
95 % 271 276 70 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 326 331 41
70 % 791 812 6
50 % 793 817 8
40 % 836 861 9
30 % 855 885 11
Entity #2 | Chains: B,I
Beta-2-microglobulin protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 670 698 2
95 % 718 747 2 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 0.9
PDBFlex
90 % 734 763 3
70 % 1028 1064 4
50 % 1050 1088 4
40 % 1050 1088 4
30 % 1050 1088 7
Entity #3 | Chains: C,J
SELF-PEPTIDE P1049 protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: E,L
AHIII TCR ALPHA CHAIN protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 9496
95 % 4 4 9959 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.8
PDBFlex
90 % 4 4 10463
70 % 6 6 7150
50 % 365 393 76
40 % 365 393 92
30 % 365 393 91
Entity #5 | Chains: F,M
AHIII TCR BETA CHAIN protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 11428
95 % 11 11 4365 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.2
PDBFlex
90 % 19 22 1769
70 % 354 380 43
50 % 372 402 64
40 % 372 402 82
30 % 372 402 86

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures