Sequence Similarity Clusters for the Entities in PDB 2J7Q

Entity #1 | Chains: A
MCMV TEGUMENT PROTEIN M48 ENCODED UBIQUITIN- SPECIFIC PROTEASE, M48USP protein, length: 232 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 64490
95 % 1 2 32732 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.8
PDBFlex
90 % 1 2 35369
70 % 1 2 31531
50 % 1 2 27519
40 % 1 2 25043
30 % 1 2 20093
Entity #2 | Chains: B,D
UBIQUITIN protein, length: 75 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 47 383 4
95 % 65 476 6 Flexibility: Low
Max RMSD: 12.4, Avg RMSD: 1.4
PDBFlex
90 % 68 490 7
70 % 77 540 9
50 % 78 555 11
40 % 78 559 14
30 % 81 575 20
Entity #3 | Chains: C
MCMV TEGUMENT PROTEIN M48 ENCODED UBIQUITIN- SPECIFIC PROTEASE, M48USP protein, length: 232 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 73775
95 % 2 2 32732 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.8
PDBFlex
90 % 2 2 35369
70 % 2 2 31531
50 % 2 2 27519
40 % 2 2 25043
30 % 2 2 20093

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures