Sequence Similarity Clusters for the Entities in PDB 2J59

Entity #1 | Chains: A,B,C,D,E,F
ADP-RIBOSYLATION FACTOR 1 protein, length: 166 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 4561
95 % 8 15 2123 Flexibility: Low
Max RMSD: 4.3, Avg RMSD: 2.9
PDBFlex
90 % 6 11 2905
70 % 19 54 464
50 % 20 62 445
40 % 23 70 421
30 % 24 74 423
Entity #2 | Chains: M,N,O,P,Q,R
RHO-GTPASE ACTIVATING PROTEIN 10 protein, length: 168 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 16676
95 % 1 1 14822 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.6
PDBFlex
90 % 1 1 14617
70 % 1 1 13789
50 % 1 1 12540
40 % 1 1 11745
30 % 1 1 10790

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures