Sequence Similarity Clusters for the Entities in PDB 2J28

Entity #1 | Chains: 0
50S RIBOSOMAL PROTEIN L32 protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 189 191 137
95 % 189 191 181
90 % 189 191 192
70 % 189 191 217
50 % 193 195 229
40 % 193 195 238
30 % 455 457 73
Entity #10 | Chains: B
23S RIBOSOMAL RNA rna, length: 2904 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #11 | Chains: C
50S RIBOSOMAL PROTEIN L2 protein, length: 267 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 188 190 141
95 % 188 190 182
90 % 188 190 193
70 % 196 198 191
50 % 472 474 46
40 % 472 474 58
30 % 472 474 61
Entity #12 | Chains: D
50S RIBOSOMAL PROTEIN L3 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 198 202 124
95 % 198 202 161
90 % 198 202 176
70 % 206 210 182
50 % 476 480 48
40 % 480 484 54
30 % 480 485 57
Entity #13 | Chains: E
50S RIBOSOMAL PROTEIN L4 protein, length: 201 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 189 193 133
95 % 189 193 173
90 % 189 193 187
70 % 193 197 197
50 % 197 201 220
40 % 230 234 204
30 % 462 466 70
Entity #14 | Chains: F
50S RIBOSOMAL PROTEIN L5 protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 193 197 130
95 % 193 197 166
90 % 193 197 177
70 % 193 197 208
50 % 465 469 50
40 % 465 469 63
30 % 465 469 65
Entity #15 | Chains: G
50S RIBOSOMAL PROTEIN L6 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 188 192 136
95 % 188 192 176
90 % 188 192 189
70 % 188 192 215
50 % 196 200 222
40 % 466 475 56
30 % 470 479 56
Entity #16 | Chains: H
50S RIBOSOMAL PROTEIN L9 protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 171 175 168
95 % 172 176 220
90 % 172 176 231
70 % 172 176 255
50 % 177 181 270
40 % 353 359 98
30 % 366 372 95
Entity #17 | Chains: I
50S RIBOSOMAL PROTEIN L11 protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 162 166 170
95 % 162 166 225
90 % 162 166 234
70 % 166 170 259
50 % 247 266 157
40 % 247 266 172
30 % 253 274 173
Entity #18 | Chains: J
50S RIBOSOMAL PROTEIN L13 protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 190 194 128
95 % 190 194 167
90 % 190 194 180
70 % 198 202 183
50 % 240 244 181
40 % 443 447 70
30 % 443 447 76
Entity #19 | Chains: K
50S RIBOSOMAL PROTEIN L14 protein, length: 121 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 191 195 125
95 % 191 195 160
90 % 191 195 173
70 % 199 203 181
50 % 479 487 38
40 % 479 487 48
30 % 479 487 51
Entity #2 | Chains: 1
50S RIBOSOMAL PROTEIN L33 protein, length: 54 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 186 190 143
95 % 186 190 183
90 % 186 190 194
70 % 194 198 194
50 % 216 220 196
40 % 426 430 80
30 % 426 430 87
Entity #20 | Chains: L
50S RIBOSOMAL PROTEIN L15 protein, length: 144 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 189 193 131
95 % 190 194 162
90 % 190 194 179
70 % 190 194 206
50 % 198 202 216
40 % 465 469 64
30 % 465 469 66
Entity #21 | Chains: M
50S RIBOSOMAL PROTEIN L16 protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 174 178 166
95 % 186 190 184
90 % 186 190 195
70 % 194 198 193
50 % 467 472 49
40 % 467 472 60
30 % 467 472 63
Entity #22 | Chains: N
50S RIBOSOMAL PROTEIN L17 protein, length: 127 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 183 187 147
95 % 189 193 170
90 % 189 193 185
70 % 197 201 186
50 % 428 432 57
40 % 467 471 53
30 % 468 473 55
Entity #23 | Chains: O
50S RIBOSOMAL PROTEIN L18 protein, length: 117 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 187 191 139
95 % 187 191 180
90 % 187 191 191
70 % 187 191 216
50 % 449 454 56
40 % 431 435 74
30 % 431 435 79
Entity #24 | Chains: P
50S RIBOSOMAL PROTEIN L19 protein, length: 114 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 189 193 134
95 % 189 193 172
90 % 189 193 186
70 % 189 193 211
50 % 244 248 179
40 % 244 248 195
30 % 244 248 203
Entity #25 | Chains: Q
50S RIBOSOMAL PROTEIN L20 protein, length: 117 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 190 194 129
95 % 190 194 163
90 % 190 194 181
70 % 198 202 184
50 % 470 474 45
40 % 478 482 49
30 % 478 482 52
Entity #26 | Chains: R
50S RIBOSOMAL PROTEIN L21 protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 190 190 140
95 % 190 190 185
90 % 190 190 196
70 % 190 190 220
50 % 198 198 225
40 % 469 469 65
30 % 469 469 67
Entity #27 | Chains: S
50S RIBOSOMAL PROTEIN L22 protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 189 193 132
95 % 189 193 171
90 % 189 193 183
70 % 197 201 185
50 % 437 443 58
40 % 437 443 73
30 % 437 443 77
Entity #28 | Chains: T
50S RIBOSOMAL PROTEIN L23 protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 193 197 121
95 % 193 197 157
90 % 193 197 170
70 % 193 197 199
50 % 197 201 217
40 % 466 471 62
30 % 466 471 64
Entity #29 | Chains: U
50S RIBOSOMAL PROTEIN L24 protein, length: 102 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 192 196 123
95 % 192 196 159
90 % 192 196 172
70 % 192 196 201
50 % 443 447 55
40 % 443 447 71
30 % 444 449 75
Entity #3 | Chains: 2
50S RIBOSOMAL PROTEIN L34 protein, length: 46 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 189 189 144
95 % 189 189 186
90 % 189 189 197
70 % 226 226 173
50 % 468 468 51
40 % 468 468 66
30 % 468 468 68
Entity #30 | Chains: V
50S RIBOSOMAL PROTEIN L25 protein, length: 94 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 188 197 120
95 % 188 197 155
90 % 188 197 168
70 % 188 197 196
50 % 189 198 211
40 % 193 202 224
30 % 193 202 237
Entity #31 | Chains: W
50S RIBOSOMAL PROTEIN L27 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 188 192 138
95 % 189 193 175
90 % 189 193 188
70 % 222 226 175
50 % 467 471 47
40 % 467 471 59
30 % 467 471 62
Entity #32 | Chains: X
50S RIBOSOMAL PROTEIN L29 protein, length: 63 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 193 197 122
95 % 193 197 156
90 % 193 197 169
70 % 193 197 198
50 % 201 205 212
40 % 395 400 85
30 % 421 426 82
Entity #33 | Chains: Y
50S RIBOSOMAL PROTEIN L30 protein, length: 58 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 190 194 126
95 % 190 194 165
90 % 190 194 178
70 % 190 194 205
50 % 252 256 175
40 % 458 464 67
30 % 458 464 69
Entity #34 | Chains: Z
50S RIBOSOMAL PROTEIN L31 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 80 80 504
95 % 80 80 685
90 % 80 80 720
70 % 80 80 759
50 % 80 80 797
40 % 281 281 129
30 % 282 282 138
Entity #4 | Chains: 3
50S RIBOSOMAL PROTEIN L35 protein, length: 64 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 186 186 148
95 % 186 186 188
90 % 186 186 199
70 % 186 186 225
50 % 216 216 200
40 % 217 217 216
30 % 217 217 226
Entity #5 | Chains: 4
50S RIBOSOMAL PROTEIN L36 protein, length: 38 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 182 184 150
95 % 182 184 192
90 % 182 184 202
70 % 190 192 218
50 % 404 408 79
40 % 404 408 94
30 % 404 408 94
Entity #6 | Chains: 7
SIGNAL SEQUENCE protein, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #7 | Chains: 8
4.5S SIGNAL RECOGNITION PARTICLE RNA rna, length: 74 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #8 | Chains: 9
SIGNAL RECOGNITION PARTICLE 54 protein, length: 430 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 83077
95 % 4 4 18069
90 % 6 6 13397
70 % 6 6 12707
50 % 6 6 11603
40 % 8 9 6675
30 % 19 20 2574
Entity #9 | Chains: A
5S RIBOSOMAL RNA rna, length: 117 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures