Sequence Similarity Clusters for the Entities in PDB 2J0S

Entity #1 | Chains: A
ATP-DEPENDENT RNA HELICASE DDX48 protein, length: 410 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 12 3519
95 % 2 14 3770 Flexibility: High
Max RMSD: 19.3, Avg RMSD: 10.7
PDBFlex
90 % 2 14 3837
70 % 3 17 2657
50 % 3 20 2181
40 % 9 31 1568
30 % 12 39 1257
Entity #2 | Chains: C
PROTEIN MAGO NASHI HOMOLOG protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 10 4686
95 % 2 10 5540 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 1.0
PDBFlex
90 % 4 14 3766
70 % 4 14 3740
50 % 4 14 3686
40 % 4 14 3672
30 % 4 14 3583
Entity #3 | Chains: D
RNA-BINDING PROTEIN 8A protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 14054
95 % 1 4 16738 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 1 4 16433
70 % 1 4 13164
50 % 1 4 12020
40 % 1 4 12918
30 % 1 4 10381
Entity #4 | Chains: E
5'-R(*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP *UP*UP*UP*UP*U)-3' rna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: T
PROTEIN CASC3 protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 12983
95 % 1 4 13228 Flexibility: Medium
Max RMSD: 6.3, Avg RMSD: 3.5
PDBFlex
90 % 1 4 13059
70 % 1 4 12375
50 % 1 4 11310
40 % 1 4 10632
30 % 1 4 9831

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures