Sequence Similarity Clusters for the Entities in PDB 2HV8

Entity #1 | Chains: A,B,C
Ras-related protein Rab-11A protein, length: 172 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 9 2483
95 % 3 20 1443 Flexibility: Low
Max RMSD: 3.6, Avg RMSD: 1.3
PDBFlex
90 % 3 20 1479
70 % 8 42 663
50 % 6 38 816
40 % 6 38 849
30 % 6 38 888
Entity #2 | Chains: D,E,F
Rab11 family-interacting protein 3 protein, length: 64 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 4745
95 % 1 3 5512 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.8
PDBFlex
90 % 1 3 5542
70 % 1 3 5485
50 % 1 3 5279
40 % 1 3 5154
30 % 1 3 4942

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2HV8 2 D, E, F Rab11 family-interacting protein 3 C-terminal region 9606
2 4UJ3 3 C, F, I, L, O, R, U, X RAB11 FAMILY-INTERACTING PROTEIN 3 C-TERMINAL DOMAIN 9606
3 4UJ4 3 C, F, I, L Rab11 family-interacting protein 3 C-TERMINAL DOMAIN, RESIDUES 695-756 9606