Sequence Similarity Clusters for the Entities in PDB 2HV8

Entity #1 | Chains: A,B,C
Ras-related protein Rab-11A protein, length: 172 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 9 2483
95 % 3 20 1432 Flexibility: Low
Max RMSD: 3.6, Avg RMSD: 1.3
PDBFlex
90 % 3 20 1472
70 % 8 42 665
50 % 23 113 268
40 % 50 170 177
30 % 286 658 18
Entity #2 | Chains: D,E,F
Rab11 family-interacting protein 3 protein, length: 64 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 4756
95 % 1 3 5533 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.8
PDBFlex
90 % 1 3 5584
70 % 1 3 5519
50 % 1 3 5312
40 % 1 3 5176
30 % 1 3 4953

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1OIX 1 A RAS-RELATED PROTEIN RAB-11A DELETION MUTANT LACKING THE 43 C-TERMINAL RESIDUES RESIDUES 1-173 9606
2 2D7C 1 A, B Ras-related protein Rab-11A residues 7-173 9606
3 2HV8 1 A, B, C Ras-related protein Rab-11A GTPase domain 9606
4 1YZK 1 A Ras-related protein Rab-11A 9606
5 4C4P 1 A RAS-RELATED PROTEIN RAB-11A RESIDUES 1-173 9606
6 5JCZ 1 A, D, I Ras-related protein Rab-11A 9606
7 1OIV 1 A, B RAS-RELATED PROTEIN RAB-11A DELETION MUTANT LACKING THE 43 C-TERMINAL RESIDUES RESIDUES 1-173 9606
8 4LX0 1 A, C Ras-related protein Rab-11A Dilute domain residues 1456-1848 9606
9 6IY1 1 A, B, C, E Ras-related protein Rab-11A 9606
10 6IY1 2 D Ras-related protein Rab-11A 9606
11 6IY1 3 F Ras-related protein Rab-11A GDP 9606
12 1OIW 1 A RAS-RELATED PROTEIN RAB-11A DELETION MUTANT LACKING THE 43 C-TERMINAL RESIDUES RESIDUES 1-173 9606
13 2GZH 1 A Ras-related protein Rab-11A G protein domain 9606 3.6.5.2 | Details
14 2GZD 1 A, B Ras-related protein Rab-11A G protein domain 9606 3.6.5.2 | Details
15 5EZ5 1 A, B Ras-related protein Rab-11A UNP residues 8-175 9606
16 4UJ5 1 A, B RAS-RELATED PROTEIN RAB-11A GTPASE DOMAIN, RESIDUES 6-186 9606
17 4LWZ 1 A, C Ras-related protein Rab-11A Dilute domain residues 1456-1848 9606
18 4UJ3 1 A, D, G, J, M, P, S, V RAS-RELATED PROTEIN RAB-11A GTPASE DOMAIN 9606
19 6IXV 2 E, F, G, H Ras-related protein Rab-11A 9606
20 4UJ4 1 A, D, G, J Ras-related protein Rab-11A GTPASE DOMAIN, RESIDUES 4-186 9606