Sequence Similarity Clusters for the Entities in PDB 2HV8

Entity #1 | Chains: A,B,C
Ras-related protein Rab-11A protein, length: 172 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 9 2462
95 % 3 20 1425 Flexibility: Low
Max RMSD: 3.6, Avg RMSD: 1.3
PDBFlex
90 % 3 20 1462
70 % 8 42 661
50 % 6 38 812
40 % 6 38 849
30 % 6 38 882
Entity #2 | Chains: D,E,F
Rab11 family-interacting protein 3 protein, length: 64 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 4557
95 % 1 3 5451 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.8
PDBFlex
90 % 1 3 5484
70 % 1 3 5415
50 % 1 3 5225
40 % 1 3 5086
30 % 1 3 4889

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures