Sequence Similarity Clusters for the Entities in PDB 2HBD

Entity #1 | Chains: A
HEMOGLOBIN A (METHYL ISOCYANIDE) (ALPHA CHAIN) protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 119 218 43
95 % 145 255 39 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 0.7
PDBFlex
90 % 146 256 44
70 % 176 339 22
50 % 393 733 7
40 % 393 733 7
30 % 428 781 10
Entity #2 | Chains: B
HEMOGLOBIN A (METHYL ISOCYANIDE) (BETA CHAIN) protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 85 165 80
95 % 153 256 36 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.7
PDBFlex
90 % 156 261 37
70 % 188 349 18
50 % 394 733 7
40 % 394 733 7
30 % 429 781 10

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures