Sequence Similarity Clusters for the Entities in PDB 2GV2

Entity #1 | Chains: A
Ubiquitin-protein ligase E3 Mdm2 protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 15 2633
95 % 8 18 2050 Flexibility: Low
Max RMSD: 8.4, Avg RMSD: 2.3
PDBFlex
90 % 22 77 277
70 % 4 10 3643
50 % 4 12 3365
40 % 4 12 3352
30 % 4 12 3283
Entity #2 | Chains: B
8-MER P53 PEPTIDE ANALOGUE protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures