Sequence Similarity Clusters for the Entities in PDB 2GTW

Entity #1 | Chains: A,D
HLA-A*0201 heavy chain protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 229 53
95 % 20 285 64 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 25 349 40
70 % 63 835 6
50 % 63 849 7
40 % 64 906 8
30 % 64 931 13
Entity #2 | Chains: B,E
Beta-2-microglobulin protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 59 743 2
95 % 70 792 2 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 0.9
PDBFlex
90 % 70 810 3
70 % 76 1114 4
50 % 77 1138 3
40 % 77 1138 4
30 % 77 1138 10
Entity #3 | Chains: C,F
octapeptide from Melan-A/MART-1 protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures