Sequence Similarity Clusters for the Entities in PDB 2GSM

Entity #1 | Chains: A,C
Cytochrome c oxidase subunit 1 protein, length: 566 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 9 3629
95 % 2 14 2618 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 2 14 2692
70 % 2 18 2275
50 % 32 79 443
40 % 32 79 464
30 % 32 79 482
Entity #2 | Chains: B,D
Cytochrome c oxidase subunit 2 protein, length: 262 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 12 2455
95 % 2 14 2507 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 2 14 2572
70 % 2 14 2706
50 % 2 15 2621
40 % 2 15 2637
30 % 32 76 495

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures