Sequence Similarity Clusters for the Entities in PDB 2GMR

Entity #1 | Chains: L
Photosynthetic Reaction center protein L chain protein, length: 281 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 75342
95 % 43 97 516 Flexibility: No
Max RMSD: 2.1, Avg RMSD: 0.4
PDBFlex
90 % 43 97 534
70 % 43 97 566
50 % 62 131 444
40 % 62 131 463
30 % 62 131 479
Entity #2 | Chains: M
Photosynthetic Reaction center protein M chain protein, length: 307 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 31 61 661
95 % 43 97 513 Flexibility: Low
Max RMSD: 6.7, Avg RMSD: 0.8
PDBFlex
90 % 43 97 538
70 % 43 97 571
50 % 62 131 442
40 % 62 131 465
30 % 62 131 481
Entity #3 | Chains: H
Photosynthetic reaction center protein H chain protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 42 91 447
95 % 43 97 512 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 0.6
PDBFlex
90 % 43 97 536
70 % 43 97 568
50 % 43 97 602
40 % 43 97 635
30 % 43 97 663

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures