Sequence Similarity Clusters for the Entities in PDB 2FX9

Entity #1 | Chains: L,M
Fab 4E10 protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 22 942
95 % 11 22 1322 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.7
PDBFlex
90 % 75 228 80
70 % 840 2262 2
50 % 1067 2875 2
40 % 1067 2875 2
30 % 2176 5831 1
Entity #2 | Chains: H,I
Fab 4E10 protein, length: 227 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 20 1011
95 % 11 23 1290 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.9
PDBFlex
90 % 11 23 1324
70 % 1034 2773 1
50 % 1096 2914 1
40 % 1096 2914 1
30 % 2177 5831 1
Entity #3 | Chains: P,Q
Fragment of HIV glycoprotein gp41 protein, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures