Sequence Similarity Clusters for the Entities in PDB 2FTC

Entity #1 | Chains: R
Mitochondrial 16S ribosomal RNA rna, length: 1568 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
Mitochondrial ribosomal protein L17 protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 46498
95 % 2 2 42171
90 % 2 2 40229
70 % 2 2 35545
50 % 2 2 30792
40 % 2 2 27945
30 % 471 473 54
Entity #11 | Chains: K
39S ribosomal protein L19, mitochondrial protein, length: 98 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 71997
95 % 1 1 59088
90 % 1 1 55726
70 % 1 1 48417
50 % 1 1 41734
40 % 1 1 37725
30 % 1 1 33251
Entity #12 | Chains: L
MRPL20 protein protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 71995
95 % 1 1 59087
90 % 1 1 56853
70 % 1 1 48416
50 % 1 1 41733
40 % 1 1 37724
30 % 1 1 33857
Entity #13 | Chains: M
mitochondrial ribosomal protein L22 isoform a protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 53051
95 % 2 2 42170
90 % 2 2 40228
70 % 2 2 35544
50 % 2 2 30791
40 % 2 2 27944
30 % 2 2 24769
Entity #14 | Chains: N
mitochondrial ribosomal protein L24 protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 50366
95 % 2 2 32941
90 % 2 2 41501
70 % 2 2 36614
50 % 2 2 24819
40 % 447 449 69
30 % 447 449 74
Entity #15 | Chains: O
Mitochondrial 39S ribosomal protein L27 protein, length: 69 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 53069
95 % 2 2 42172
90 % 2 2 40802
70 % 2 2 36016
50 % 2 2 30793
40 % 2 2 27946
30 % 2 2 25077
Entity #16 | Chains: P
mitochondrial ribosomal protein L33 isoform a protein, length: 52 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 35817
95 % 3 3 28640
90 % 3 3 27643
70 % 3 3 24980
50 % 3 3 21924
40 % 3 3 20060
30 % 3 3 17980
Entity #17 | Chains: Q
39S ribosomal protein L34, mitochondrial protein, length: 38 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 80543
95 % 1 1 59848
90 % 1 1 56385
70 % 1 1 48418
50 % 1 1 41735
40 % 1 1 37726
30 % 1 1 33252
Entity #2 | Chains: A
Mitochondrial ribosomal protein L1 protein, length: 189 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61013
95 % 1 1 56712
90 % 1 1 53530
70 % 1 1 38388
50 % 1 1 40206
40 % 1 1 36375
30 % 1 1 32071
Entity #3 | Chains: B
mitochondrial ribosomal protein L2 protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 56361
95 % 2 2 40281
90 % 2 2 38445
70 % 2 2 34064
50 % 2 2 24027
40 % 2 2 21933
30 % 2 2 23873
Entity #4 | Chains: C
Mitochondrial 39S ribosomal protein L3 protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 85086
95 % 1 1 56994
90 % 1 1 53531
70 % 1 1 38389
50 % 1 1 40207
40 % 1 1 36377
30 % 483 485 56
Entity #5 | Chains: D
mitochondrial ribosomal protein L4 isoform a protein, length: 175 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 39312
95 % 2 2 33223
90 % 2 2 31883
70 % 2 2 28593
50 % 2 2 25018
40 % 2 2 22791
30 % 2 2 20401
Entity #6 | Chains: E,F
39S ribosomal protein L12, mitochondrial protein, length: 137 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 56362
95 % 1 1 40282
90 % 1 1 38446
70 % 1 1 34065
50 % 1 1 29596
40 % 1 1 26852
30 % 1 1 23874
Entity #7 | Chains: G
39S ribosomal protein L11, mitochondrial protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 34202
95 % 3 3 26318
90 % 3 3 26004
70 % 3 3 23669
50 % 3 3 20785
40 % 3 3 19029
30 % 257 274 170
Entity #8 | Chains: H
39S ribosomal protein L13, mitochondrial protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 84792
95 % 1 1 57008
90 % 1 1 53806
70 % 1 1 46613
50 % 1 1 40208
40 % 1 1 36378
30 % 1 1 32072
Entity #9 | Chains: I
Mitochondrial ribosomal protein L16 protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 56363
95 % 2 2 40283
90 % 2 2 30507
70 % 2 2 34066
50 % 2 2 24035
40 % 2 2 26853
30 % 2 2 23875

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures