Sequence Similarity Clusters for the Entities in PDB 2FRV

Entity #1 | Chains: A,C,E,G,I,S
PERIPLASMIC HYDROGENASE protein, length: 264 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 10138
95 % 2 3 8754 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 2 3 8670
70 % 2 3 8429
50 % 43 47 670
40 % 48 53 613
30 % 63 68 532
Entity #2 | Chains: B,D,F,H,J,L
PERIPLASMIC HYDROGENASE protein, length: 536 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 16044
95 % 2 3 9357 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 2 3 8565
70 % 2 3 8322
50 % 43 47 694
40 % 81 88 390
30 % 81 88 404

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures