Sequence Similarity Clusters for the Entities in PDB 2FBW

Entity #1 | Chains: A,N
Succinate dehydrogenase flavoprotein subunit protein, length: 621 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 13 4171
95 % 5 13 5162 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 5 36 1762
70 % 5 48 1080
50 % 5 48 1115
40 % 5 72 584
30 % 7 83 513
Entity #2 | Chains: B,O
succinate dehydrogenase Ip subunit protein, length: 252 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 13 4283
95 % 5 13 5339 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 5 13 5387
70 % 5 36 1824
50 % 5 48 1122
40 % 5 48 1163
30 % 5 48 1202
Entity #3 | Chains: C,P
Succinate dehydrogenase cytochrome B, large subunit protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 24392
95 % 5 13 4985 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 5 13 5054
70 % 5 34 1898
50 % 5 34 1944
40 % 5 34 1985
30 % 5 34 2015
Entity #4 | Chains: D,Q
Succinate dehydrogenase cytochrome B, small subunit protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 13 4017
95 % 5 13 4861 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 5 13 4921
70 % 5 34 1887
50 % 5 34 1927
40 % 5 34 1965
30 % 5 34 1997

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures