Sequence Similarity Clusters for the Entities in PDB 2E5L

Entity #1 | Chains: A
16S ribosomal RNA rna, length: 1520 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: I
30S ribosomal protein S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 62 101 269
95 % 255 335 52 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.7
PDBFlex
90 % 255 335 57
70 % 255 335 69
50 % 285 538 31
40 % 285 538 39
30 % 285 538 42
Entity #11 | Chains: J
30S ribosomal protein S10 protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 254 333 36
95 % 255 334 58 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.1
PDBFlex
90 % 255 334 63
70 % 255 334 74
50 % 286 549 26
40 % 286 549 34
30 % 286 586 32
Entity #12 | Chains: K
30S ribosomal protein S11 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 255 335 34
95 % 255 335 55 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.7
PDBFlex
90 % 255 335 60
70 % 255 335 72
50 % 285 543 29
40 % 285 543 38
30 % 285 543 41
Entity #13 | Chains: L
30S ribosomal protein S12 protein, length: 131 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 168 244 61
95 % 255 342 45 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 255 342 49
70 % 286 547 17
50 % 286 565 22
40 % 286 565 28
30 % 286 565 33
Entity #14 | Chains: M
30S ribosomal protein S13 protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 255 336 30
95 % 255 336 50 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.7
PDBFlex
90 % 255 336 56
70 % 255 336 68
50 % 288 549 27
40 % 288 552 35
30 % 288 552 38
Entity #15 | Chains: N
30S ribosomal protein S14 protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 255 334 35
95 % 255 334 56 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.8
PDBFlex
90 % 255 334 61
70 % 255 341 60
50 % 255 355 89
40 % 255 355 103
30 % 255 355 103
Entity #16 | Chains: O
30S ribosomal protein S15 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 255 338 29
95 % 259 343 43 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.5
PDBFlex
90 % 259 343 47
70 % 259 343 58
50 % 292 561 23
40 % 292 561 30
30 % 292 561 34
Entity #17 | Chains: P
30S ribosomal protein S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 255 330 37
95 % 255 335 54 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.5
PDBFlex
90 % 255 335 59
70 % 255 335 70
50 % 255 335 94
40 % 255 335 109
30 % 255 335 112
Entity #18 | Chains: Q
30S ribosomal protein S17 protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 63 101 325
95 % 253 328 59 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.6
PDBFlex
90 % 254 332 64
70 % 254 332 75
50 % 254 332 96
40 % 254 332 111
30 % 254 332 114
Entity #19 | Chains: R
30S ribosomal protein S18 protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 31 54 888
95 % 220 279 74 Flexibility: Low
Max RMSD: 8.5, Avg RMSD: 0.9
PDBFlex
90 % 220 279 79
70 % 220 279 89
50 % 220 279 112
40 % 220 279 130
30 % 220 279 140
Entity #2 | Chains: 1,2
5'-R(*GP*AP*AP*AP*GP*A)-3' rna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: S
30S ribosomal protein S19 protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 228 293 44
95 % 228 293 65 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 0.9
PDBFlex
90 % 228 293 71
70 % 256 338 63
50 % 286 550 24
40 % 286 550 32
30 % 286 550 36
Entity #21 | Chains: T
30S ribosomal protein S20 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 28 56 569
95 % 255 334 57 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.7
PDBFlex
90 % 255 334 62
70 % 255 334 73
50 % 255 334 95
40 % 255 334 110
30 % 255 334 113
Entity #22 | Chains: V
30S ribosomal protein Thx protein, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 229 292 46
95 % 229 292 68 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.5
PDBFlex
90 % 229 292 74
70 % 229 292 85
50 % 229 292 108
40 % 229 292 127
30 % 229 292 135
Entity #3 | Chains: B
30S ribosomal protein S2 protein, length: 227 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 61575
95 % 255 336 49 Flexibility: Low
Max RMSD: 9.2, Avg RMSD: 1.5
PDBFlex
90 % 255 336 54
70 % 255 336 67
50 % 285 541 30
40 % 285 547 36
30 % 285 547 39
Entity #4 | Chains: C
30S ribosomal protein S3 protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 220 279 49
95 % 220 279 75 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.7
PDBFlex
90 % 220 279 80
70 % 220 279 90
50 % 227 366 86
40 % 227 366 101
30 % 227 366 101
Entity #5 | Chains: D
30S ribosomal protein S4 protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 253 328 38
95 % 255 336 48 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.5
PDBFlex
90 % 255 336 55
70 % 255 336 65
50 % 255 360 88
40 % 285 555 31
30 % 285 555 35
Entity #6 | Chains: E
30S ribosomal protein S5 protein, length: 161 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 255 335 33
95 % 255 335 53 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 0.6
PDBFlex
90 % 255 335 58
70 % 255 335 71
50 % 286 545 28
40 % 286 545 37
30 % 286 545 40
Entity #7 | Chains: F
30S ribosomal protein S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 257 340 26
95 % 265 348 40 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 0.8
PDBFlex
90 % 265 348 44
70 % 265 348 56
50 % 265 348 90
40 % 265 348 104
30 % 265 348 105
Entity #8 | Chains: G
30S ribosomal protein S7 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 256 339 27
95 % 256 340 47 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 0.8
PDBFlex
90 % 256 340 52
70 % 256 338 64
50 % 285 479 51
40 % 285 485 67
30 % 285 485 70
Entity #9 | Chains: H
30S ribosomal protein S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 255 335 31
95 % 255 335 51 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.4
PDBFlex
90 % 256 339 51
70 % 256 339 62
50 % 257 364 84
40 % 288 560 29
30 % 328 760 21

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures