Sequence Similarity Clusters for the Entities in PDB 2D31

Entity #1 | Chains: A,D
HLA class I histocompatibility antigen, alpha chain G protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 39275
95 % 6 7 7999 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.0
PDBFlex
90 % 6 7 7940
70 % 816 835 6
50 % 826 849 7
40 % 881 906 8
30 % 901 931 13
Entity #2 | Chains: B,E
Beta-2-microglobulin protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 714 743 2
95 % 762 792 2 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 0.9
PDBFlex
90 % 780 810 3
70 % 1079 1114 4
50 % 1101 1138 3
40 % 1101 1138 4
30 % 1101 1138 10
Entity #3 | Chains: C,F
9-mer peptide from Histone H2A protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures