Sequence Similarity Clusters for the Entities in PDB 2CMR

Entity #1 | Chains: A
TRANSMEMBRANE GLYCOPROTEIN protein, length: 226 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 27531
95 % 2 4 20979 Flexibility: Medium
Max RMSD: 10.0, Avg RMSD: 5.5
PDBFlex
90 % 2 4 21531
70 % 2 4 19812
50 % 2 4 17514
40 % 2 4 16160
30 % 2 4 14496
Entity #2 | Chains: H
D5 protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 79139
95 % 1 1 55752
90 % 11 43 787
70 % 724 2784 1
50 % 768 2927 1
40 % 768 2927 1
30 % 1522 5855 1
Entity #3 | Chains: L
D5 protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 78130
95 % 1 2 17322 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 1.4
PDBFlex
90 % 136 508 4
70 % 581 2273 2
50 % 743 2886 2
40 % 743 2886 2
30 % 1523 5855 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures