Sequence Similarity Clusters for the Entities in PDB 2CII

Entity #1 | Chains: A
H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN D-B ALPHA CHAIN protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 69795
95 % 44 70 265 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 1.2
PDBFlex
90 % 45 72 279
70 % 647 790 6
50 % 649 795 8
40 % 689 839 8
30 % 694 862 11
Entity #2 | Chains: B
BETA-2-MICROGLOBULIN protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 563 685 2
95 % 602 733 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 0.9
PDBFlex
90 % 614 748 3
70 % 820 1037 4
50 % 835 1061 4
40 % 835 1061 4
30 % 835 1061 8
Entity #3 | Chains: C
NUCLEOPROTEIN protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures