Sequence Similarity Clusters for the Entities in PDB 2CF2

Entity #1 | Chains: A,J
FATTY ACID SYNTHASE, KS DOMAIN protein, length: 406 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 8560
95 % 24 25 603 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 24 25 632
70 % 26 27 632
50 % 31 32 631
40 % 75 76 378
30 % 95 96 299
Entity #2 | Chains: B,K
FATTY ACID SYNTHASE, MAT DOMAIN protein, length: 304 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 5182
95 % 2 3 5449 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 2 3 5498
70 % 2 3 5433
50 % 4 5 4421
40 % 4 5 4334
30 % 32 33 1403
Entity #3 | Chains: C,L
FATTY ACID SYNTHASE, DH DOMAIN protein, length: 342 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 50291
95 % 1 1 32929 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 1.2
PDBFlex
90 % 1 1 31552
70 % 1 1 28302
50 % 1 1 24828
40 % 1 1 22668
30 % 1 1 20209
Entity #4 | Chains: D,M
FATTY ACID SYNTHASE, ER DOMAIN protein, length: 295 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 50293
95 % 3 3 20053 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.7
PDBFlex
90 % 3 3 18569
70 % 3 3 21602
50 % 3 3 19048
40 % 3 3 17526
30 % 3 3 15774
Entity #5 | Chains: E,N
FATTY ACID SYNTHASE, KR DOMAIN protein, length: 226 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 54644
95 % 1 1 38311 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 4 4 5010
70 % 17 17 1301
50 % 54 54 344
40 % 234 235 30
30 % 841 842 3

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1NM2 1 A malonyl CoA:acyl carrier protein malonyltransferase Malonyl-CoA:ACP Transacylase 1902 2.3.1.39 | Details
2 2CF2 2 B, K FATTY ACID SYNTHASE, MAT DOMAIN 9823 2.3.1.85 | Details
3 2CDH 2 4, 5, 6, 7, 8, 9, M, N, O, P, Q, R MALONYL/PALMITOYL TRANSFERASE PDB ENTRY 1NM2 5541