Sequence Similarity Clusters for the Entities in PDB 2CF2

Entity #1 | Chains: A,J
FATTY ACID SYNTHASE, KS DOMAIN protein, length: 406 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 8218
95 % 24 25 598 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 24 25 635
70 % 26 27 629
50 % 31 32 628
40 % 75 76 378
30 % 95 96 297
Entity #2 | Chains: B,K
FATTY ACID SYNTHASE, MAT DOMAIN protein, length: 304 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 5194
95 % 2 3 5448 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 2 3 5485
70 % 2 3 5429
50 % 4 5 4427
40 % 4 5 4340
30 % 32 33 1398
Entity #3 | Chains: C,L
FATTY ACID SYNTHASE, DH DOMAIN protein, length: 342 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 50147
95 % 1 1 32860 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 1.2
PDBFlex
90 % 1 1 31528
70 % 1 1 28350
50 % 1 1 24802
40 % 1 1 22633
30 % 1 1 20198
Entity #4 | Chains: D,M
FATTY ACID SYNTHASE, ER DOMAIN protein, length: 295 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 50149
95 % 3 3 20021 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.7
PDBFlex
90 % 3 3 18545
70 % 3 3 17851
50 % 3 3 16030
40 % 3 3 14868
30 % 3 3 13489
Entity #5 | Chains: E,N
FATTY ACID SYNTHASE, KR DOMAIN protein, length: 226 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 54532
95 % 1 1 32861 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 4 4 5000
70 % 17 17 1302
50 % 48 48 382
40 % 234 235 30
30 % 841 842 3

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1NM2 1 A malonyl CoA:acyl carrier protein malonyltransferase Malonyl-CoA:ACP Transacylase 1902 2.3.1.39 | Details
2 2CF2 2 B, K FATTY ACID SYNTHASE, MAT DOMAIN 9823 2.3.1.85 | Details
3 2CDH 2 4, 5, 6, 7, 8, 9, M, N, O, P, Q, R MALONYL/PALMITOYL TRANSFERASE PDB ENTRY 1NM2 5541