Sequence Similarity Clusters for the Entities in PDB 2CF2

Entity #1 | Chains: A,J
FATTY ACID SYNTHASE, KS DOMAIN protein, length: 406 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 8212
95 % 24 25 601 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 24 25 630
70 % 26 27 632
50 % 31 32 630
40 % 94 95 286
30 % 95 96 295
Entity #2 | Chains: B,K
FATTY ACID SYNTHASE, MAT DOMAIN protein, length: 304 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 5166
95 % 2 3 5439 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 2 3 5474
70 % 2 3 5408
50 % 4 5 4414
40 % 4 5 4325
30 % 32 33 1402
Entity #3 | Chains: C,L
FATTY ACID SYNTHASE, DH DOMAIN protein, length: 342 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 50078
95 % 1 1 32852 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 1.2
PDBFlex
90 % 1 1 31499
70 % 1 1 28287
50 % 1 1 24773
40 % 1 1 22584
30 % 1 1 20158
Entity #4 | Chains: D,M
FATTY ACID SYNTHASE, ER DOMAIN protein, length: 295 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 50080
95 % 3 3 20016 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.7
PDBFlex
90 % 3 3 18526
70 % 3 3 20966
50 % 3 3 19078
40 % 3 3 17494
30 % 3 3 13481
Entity #5 | Chains: E,N
FATTY ACID SYNTHASE, KR DOMAIN protein, length: 226 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 50081
95 % 1 1 32853 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 4 4 5003
70 % 17 17 1297
50 % 54 54 345
40 % 233 234 32
30 % 842 843 3

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1NM2 1 A malonyl CoA:acyl carrier protein malonyltransferase Malonyl-CoA:ACP Transacylase 1902 2.3.1.39 | Details
2 2QC3 1 A Malonyl CoA-acyl carrier protein transacylase 1773 2.3.1.39 | Details
3 2QJ3 1 A, B Malonyl CoA-acyl carrier protein transacylase 1773 2.3.1.39 | Details
4 2CF2 2 B, K FATTY ACID SYNTHASE, MAT DOMAIN 9823 2.3.1.85 | Details
5 2CDH 2 4, 5, 6, 7, 8, 9, M, N, O, P, Q, R MALONYL/PALMITOYL TRANSFERASE PDB ENTRY 1NM2 5541