Sequence Similarity Clusters for the Entities in PDB 2CF2

Entity #1 | Chains: A,J
FATTY ACID SYNTHASE, KS DOMAIN protein, length: 406 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 8457
95 % 24 25 588 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 24 25 621
70 % 26 27 627
50 % 31 32 626
40 % 94 95 273
30 % 95 96 278
Entity #2 | Chains: B,K
FATTY ACID SYNTHASE, MAT DOMAIN protein, length: 304 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 5126
95 % 2 3 5385 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 2 3 5430
70 % 2 3 5368
50 % 4 5 4386
40 % 4 5 4295
30 % 32 33 1382
Entity #3 | Chains: C,L
FATTY ACID SYNTHASE, DH DOMAIN protein, length: 342 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 49581
95 % 1 1 32510 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 1.2
PDBFlex
90 % 1 1 31236
70 % 1 1 28053
50 % 1 1 24546
40 % 1 1 22417
30 % 1 1 20018
Entity #4 | Chains: D,M
FATTY ACID SYNTHASE, ER DOMAIN protein, length: 295 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 49582
95 % 3 3 19812 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.7
PDBFlex
90 % 3 3 19354
70 % 3 3 17691
50 % 3 3 18870
40 % 3 3 14698
30 % 3 3 13353
Entity #5 | Chains: E,N
FATTY ACID SYNTHASE, KR DOMAIN protein, length: 226 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 49583
95 % 1 1 32512 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 4 4 4961
70 % 17 17 1282
50 % 54 54 345
40 % 234 235 28
30 % 840 841 3

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures