Sequence Similarity Clusters for the Entities in PDB 2CCI

Entity #1 | Chains: A,C
Cyclin-dependent kinase 2 protein, length: 299 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 353 359 50
95 % 406 413 45 Flexibility: Low
Max RMSD: 7.4, Avg RMSD: 2.2
PDBFlex
90 % 406 413 49
70 % 406 413 61
50 % 430 439 80
40 % 447 468 89
30 % 852 924 17
Entity #2 | Chains: B,D
Cyclin-A2 protein, length: 258 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 86 89 207
95 % 109 112 224 Flexibility: No
Max RMSD: 1.4, Avg RMSD: 0.4
PDBFlex
90 % 113 116 228
70 % 113 116 252
50 % 113 116 277
40 % 113 116 291
30 % 121 125 281
Entity #3 | Chains: F,I
Cell division control protein 6 homolog protein, length: 30 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 42213
95 % 1 1 36916
90 % 1 1 35264
70 % 1 1 31338
50 % 1 1 27326
40 % 1 1 24943
30 % 1 1 22185

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures