Sequence Similarity Clusters for the Entities in PDB 2C8Z

Entity #1 | Chains: A
THROMBIN, LIGHT CHAIN protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 222 349 53
95 % 174 285 126 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 174 285 130
70 % 171 277 148
50 % 171 277 171
40 % 171 277 183
30 % 171 277 192
Entity #2 | Chains: B
THROMBIN HEAVY CHAIN protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 196 298 98
95 % 229 362 79 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 0.6
PDBFlex
90 % 227 360 84
70 % 231 391 78
50 % 231 391 101
40 % 231 393 121
30 % 1317 1949 6
Entity #3 | Chains: I
HIRUDIN VARIANT-2 protein, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures