Sequence Similarity Clusters for the Entities in PDB 2C5W

Entity #1 | Chains: A
PENICILLIN-BINDING PROTEIN 1A protein, length: 16 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
PENICILLIN-BINDING PROTEIN 1A protein, length: 385 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 85963
95 % 1 4 15128 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.5
PDBFlex
90 % 1 4 13637
70 % 2 5 11822
50 % 2 5 10796
40 % 2 5 10159
30 % 2 5 9661

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures