Sequence Similarity Clusters for the Entities in PDB 2C35

Entity #1 | Chains: A,C,E,G
DNA-DIRECTED RNA POLYMERASE II 16 KDA POLYPEPTIDE protein, length: 152 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 12 4306
95 % 1 14 4359 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 1 14 4370
70 % 1 14 4323
50 % 1 14 4212
40 % 1 16 3519
30 % 1 16 3439
Entity #2 | Chains: B,D,F,H
DNA-DIRECTED RNA POLYMERASE II 19 KDA POLYPEPTIDE protein, length: 172 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 14 3645
95 % 1 14 4372 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.9
PDBFlex
90 % 1 14 4431
70 % 1 14 4386
50 % 4 108 489
40 % 4 108 526
30 % 4 108 549

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures