Sequence Similarity Clusters for the Entities in PDB 2C0L

Entity #1 | Chains: A
PEROXISOMAL TARGETING SIGNAL 1 RECEPTOR protein, length: 305 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 11902
95 % 3 6 5842 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 2.2
PDBFlex
90 % 3 6 5894
70 % 3 6 5894
50 % 3 6 5677
40 % 3 6 5534
30 % 7 11 3885
Entity #2 | Chains: B
NONSPECIFIC LIPID-TRANSFER PROTEIN protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 39877
95 % 2 3 27127 Flexibility: Medium
Max RMSD: 4.1, Avg RMSD: 4.1
PDBFlex
90 % 2 3 26200
70 % 2 3 23867
50 % 2 3 20967
40 % 2 3 19174
30 % 2 3 17198

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures