Sequence Similarity Clusters for the Entities in PDB 2BO9

Entity #1 | Chains: A,C
CARBOXYPEPTIDASE A4 protein, length: 308 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 13988
95 % 1 4 15278 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 1 4 14561
70 % 1 4 12793
50 % 6 45 954
40 % 11 85 433
30 % 20 104 394
Entity #2 | Chains: B,D
HUMAN LATEXIN protein, length: 222 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 49328
95 % 1 1 29528 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 1 1 36108
70 % 1 2 23594
50 % 1 2 20740
40 % 1 2 18965
30 % 1 2 16973

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures