Sequence Similarity Clusters for the Entities in PDB 2BMQ

Entity #1 | Chains: A
OXYGENASE-ALPHA NBDO protein, length: 447 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 31227
95 % 3 3 30025 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.1
PDBFlex
90 % 3 3 25856
70 % 14 31 2069
50 % 14 31 2122
40 % 14 34 1684
30 % 15 52 522
Entity #2 | Chains: B
OXYGENASE-BETA NBDO protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 31226
95 % 3 3 30024 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 3 4 15359
70 % 14 31 2067
50 % 14 31 2119
40 % 14 31 2152
30 % 14 31 2184

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures