Sequence Similarity Clusters for the Entities in PDB 2BF8

Entity #1 | Chains: A
UBIQUITIN-CONJUGATING ENZYME E2-25 KDA protein, length: 159 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 39388
95 % 2 2 33808 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.7
PDBFlex
90 % 2 2 32346
70 % 2 2 29027
50 % 3 4 15134
40 % 63 110 336
30 % 94 174 201
Entity #2 | Chains: B
UBIQUITIN-LIKE PROTEIN SMT3C protein, length: 77 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 12 4986
95 % 9 17 2165 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.2
PDBFlex
90 % 9 17 2188
70 % 9 17 2263
50 % 11 24 1708
40 % 11 25 1792
30 % 13 35 1290

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures