Sequence Similarity Clusters for the Entities in PDB 2BCG

Entity #1 | Chains: G
Secretory pathway GDP dissociation inhibitor protein, length: 453 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 5 13485
95 % 1 5 13254 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.2
PDBFlex
90 % 1 5 13064
70 % 1 5 11992
50 % 2 10 5403
40 % 2 10 5267
30 % 2 10 5036
Entity #2 | Chains: Y
GTP-binding protein YPT1 protein, length: 206 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 81540
95 % 1 3 15577 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.6
PDBFlex
90 % 1 3 15348
70 % 1 24 1480
50 % 1 120 212
40 % 7 177 168
30 % 62 653 20

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures