Sequence Similarity Clusters for the Entities in PDB 2B2X

Entity #1 | Chains: A,B
Integrin alpha-1 protein, length: 223 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 45453
95 % 1 1 34667 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 8 10 4865
70 % 8 10 4806
50 % 12 26 682
40 % 12 26 709
30 % 12 26 749
Entity #2 | Chains: H,I
Antibody AQC2 Fab protein, length: 226 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 39317
95 % 2 2 26950 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 1.6
PDBFlex
90 % 3 3 16209
70 % 1292 2903 1
50 % 1365 3048 1
40 % 1365 3048 1
30 % 2708 6095 1
Entity #3 | Chains: L,M
Antibody AQC2 Fab protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 39314
95 % 2 2 26949 Flexibility: Medium
Max RMSD: 5.7, Avg RMSD: 3.9
PDBFlex
90 % 2 2 26039
70 % 1053 2368 2
50 % 1328 3003 2
40 % 1328 3003 2
30 % 2709 6095 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5HGJ 1 A, B Integrin alpha-1 Extracellular VWFA domain residues 170-364 9606
2 1PT6 1 A, B Integrin alpha-1 residue 136-338 9606
3 4A0Q 1 A, B INTEGRIN ALPHA-1 INTEGRIN ALPHA1 I-DOMAIN, RESIDUES 166-366 9606
4 1QC5 1 A PROTEIN (ALPHA1 BETA1 INTEGRIN) I-DOMAIN 9606
5 1QC5 2 B PROTEIN (ALPHA1 BETA1 INTEGRIN) I-DOMAIN 9606
6 1QCY 1 A I-DOMAIN OF INTEGRIN ALPHA1BETA1 FRAGMENT, I-DOMAIN OF HUMAN INTEGRIN A1B1 9606
7 1CK4 1 A, B INTEGRIN ALPHA-1 I-DOMAIN 10116
8 2B2X 1 A, B Integrin alpha-1 I domain R delta H 10116
9 1MHP 1 A, B integrin alpha 1, (RESIDUES 169-360) alpha1 I-domain 10116
10 2M32 1 A Integrin alpha-1 9606