Sequence Similarity Clusters for the Entities in PDB 2B2X

Entity #1 | Chains: A,B
Integrin alpha-1 protein, length: 223 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 44183
95 % 1 1 34607 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 8 10 4862
70 % 8 10 4814
50 % 12 26 680
40 % 12 26 709
30 % 12 26 751
Entity #2 | Chains: H,I
Antibody AQC2 Fab protein, length: 226 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 44069
95 % 2 2 25868 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 1.6
PDBFlex
90 % 3 3 16209
70 % 1291 2902 1
50 % 1355 3034 1
40 % 1364 3047 1
30 % 2706 6093 1
Entity #3 | Chains: L,M
Antibody AQC2 Fab protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 44068
95 % 2 2 26878 Flexibility: Medium
Max RMSD: 5.7, Avg RMSD: 3.9
PDBFlex
90 % 2 2 25990
70 % 1052 2367 2
50 % 1327 3002 2
40 % 1327 3002 2
30 % 2707 6093 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5HGJ 1 A, B Integrin alpha-1 Extracellular VWFA domain residues 170-364 9606
2 1PT6 1 A, B Integrin alpha-1 residue 136-338 9606
3 4A0Q 1 A, B INTEGRIN ALPHA-1 INTEGRIN ALPHA1 I-DOMAIN, RESIDUES 166-366 9606
4 1V7P 3 C Integrin alpha-2 RESIDUES 138-337 9606
5 1QC5 1 A PROTEIN (ALPHA1 BETA1 INTEGRIN) I-DOMAIN 9606
6 1QC5 2 B PROTEIN (ALPHA1 BETA1 INTEGRIN) I-DOMAIN 9606
7 1DZI 1 A INTEGRIN ALPHA2 I DOMAIN 9606
8 1AOX 1 A, B INTEGRIN ALPHA 2 BETA I DOMAIN 9606
9 1QCY 1 A I-DOMAIN OF INTEGRIN ALPHA1BETA1 FRAGMENT, I-DOMAIN OF HUMAN INTEGRIN A1B1 9606
10 5HJ2 1 A, B, C, D, E, F Integrin alpha-2 VWFA domain residues 170-366 9606
11 1CK4 1 A, B INTEGRIN ALPHA-1 I-DOMAIN 10116
12 2B2X 1 A, B Integrin alpha-1 I domain R delta H 10116
13 1MHP 1 A, B integrin alpha 1, (RESIDUES 169-360) alpha1 I-domain 10116
14 6NDH 3 C, F, I, L, O, R Integrin alpha-2 9606
15 6ND9 3 C, F, I, L, O, R Integrin alpha-2 9606
16 5THP 3 C, F, I, L, O, R Integrin alpha-2 UNP residues 170-366 9606
17 6NDD 3 C, F, I, L, O, R Integrin alpha-2 9606
18 6NDA 3 C, F, I, L, O, R Integrin alpha-2 9606
19 6NDG 3 C, F, I, L, O, R Integrin alpha-2 9606
20 6ND8 3 C, F, I, L, O, R Integrin alpha-2 9606
21 6NDB 3 C, F, I, L, O, R Integrin alpha-2 9606
22 6NDC 3 C, F, I, L, O, R Integrin alpha-2 9606
23 4BJ3 1 A, B INTEGRIN ALPHA-2 I DOMAIN, RESIDUES 171-368 9606
24 6NDF 3 C, F, I, L, O, R Integrin alpha-2 9606
25 6NDE 3 C, F, I, L, O, R Integrin alpha-2 9606
26 2M32 1 A Integrin alpha-1 9606