Sequence Similarity Clusters for the Entities in PDB 2B2X

Entity #1 | Chains: A,B
Integrin alpha-1 protein, length: 223 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 37784
95 % 1 1 31835 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 8 10 4887
70 % 8 10 4830
50 % 12 26 687
40 % 12 26 713
30 % 12 26 755
Entity #2 | Chains: H,I
Antibody AQC2 Fab protein, length: 226 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 40082
95 % 2 2 27835 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 1.6
PDBFlex
90 % 3 3 16262
70 % 1293 2908 1
50 % 1366 3053 1
40 % 1366 3053 1
30 % 2710 6105 1
Entity #3 | Chains: L,M
Antibody AQC2 Fab protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 40081
95 % 2 2 27011 Flexibility: Medium
Max RMSD: 5.7, Avg RMSD: 3.9
PDBFlex
90 % 2 2 26116
70 % 1054 2373 2
50 % 1329 3008 2
40 % 1329 3008 2
30 % 2711 6105 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2B2X 1 A, B Integrin alpha-1 I domain R delta H 10116