Sequence Similarity Clusters for the Entities in PDB 2B2X

Entity #1 | Chains: A,B
Integrin alpha-1 protein, length: 223 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 43714
95 % 1 1 34389 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 8 10 4827
70 % 8 10 4789
50 % 12 26 674
40 % 12 26 703
30 % 12 26 747
Entity #2 | Chains: H,I
Antibody AQC2 Fab protein, length: 226 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 39019
95 % 2 2 27611 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 1.6
PDBFlex
90 % 3 3 16120
70 % 1282 2883 1
50 % 1355 3028 1
40 % 1355 3028 1
30 % 2688 6055 1
Entity #3 | Chains: L,M
Antibody AQC2 Fab protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 45054
95 % 2 2 26755 Flexibility: Medium
Max RMSD: 5.7, Avg RMSD: 3.9
PDBFlex
90 % 2 2 25863
70 % 1044 2352 2
50 % 1318 2983 2
40 % 1318 2983 2
30 % 2689 6055 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures