Sequence Similarity Clusters for the Entities in PDB 2AEN

Entity #1 | Chains: A,B,C,D,E,F,G,H
Outer capsid protein VP4, VP8* core protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 9906
95 % 3 4 6219 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 3 4 6241
70 % 6 12 2096
50 % 6 20 891
40 % 15 41 624
30 % 15 41 657

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures