Sequence Similarity Clusters for the Entities in PDB 2A40

Entity #1 | Chains: A,D
Actin, alpha skeletal muscle protein, length: 375 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 21 157 7
95 % 22 168 14 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 0.9
PDBFlex
90 % 23 219 9
70 % 32 244 13
50 % 32 251 16
40 % 32 271 22
30 % 32 292 28
Entity #2 | Chains: B,E
Deoxyribonuclease-1 protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 10 7325
95 % 1 11 6923 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.6
PDBFlex
90 % 1 11 6944
70 % 1 12 6191
50 % 1 12 5957
40 % 1 12 5923
30 % 1 12 5538
Entity #3 | Chains: C,F
Wiskott-Aldrich syndrome protein family member 2 protein, length: 32 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 49957
95 % 1 1 39877 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 1 36492
70 % 1 1 33701
50 % 1 1 28308
40 % 1 1 26620
30 % 1 1 23617

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures