Sequence Similarity Clusters for the Entities in PDB 2A1T

Entity #1 | Chains: A,B,C,D
Acyl-CoA dehydrogenase, medium-chain specific, mitochondrial precursor protein, length: 421 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 6555
95 % 4 6 2867 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.4
PDBFlex
90 % 4 6 2922
70 % 7 9 2144
50 % 7 9 2175
40 % 28 33 548
30 % 60 65 274
Entity #2 | Chains: R
Electron transfer flavoprotein alpha-subunit, mitochondrial precursor protein, length: 333 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 24450
95 % 3 4 19296 Flexibility: Medium
Max RMSD: 8.6, Avg RMSD: 3.1
PDBFlex
90 % 3 4 18856
70 % 3 4 17508
50 % 4 5 12335
40 % 4 5 11530
30 % 12 16 3093
Entity #3 | Chains: S
Electron transfer flavoprotein beta-subunit protein, length: 255 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 41364
95 % 3 4 19297 Flexibility: Low
Max RMSD: 3.3, Avg RMSD: 1.4
PDBFlex
90 % 3 4 18857
70 % 3 4 17509
50 % 4 5 12589
40 % 4 5 11754
30 % 10 13 3731

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures